Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042239.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 931

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042239.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 752 bp

atgtgttttaaagtcaacaatcggaatttattttttggtttagaagatgtgctttatatctctgggcttcaggtagaagggagactagtgataaaggaagaggaggaggtcaatggaaacctttcagtagtagggttaggaggagtgccttcaatccacttgaagaacaatgctgttcgacttgattggttaagagacacgtttgagactgtacccgaagttgtagatgatgatacatttgaccgtcatgttagagcattttccctctatgttttaggcactaccattctcagtaataaggatcataggttcgtgaatttgtgctacttgaagtgcttgtccgtgataggggaaattaaggagtatgcatggggagttgcaatgctctcccacgtgcaccattgtttacggcatcattgcaacacgaggacgagtgcaattggcggccacttgttcttcctcatggtgtgggcgttggagcatattcctgcctttgcaagggaactcttcaagcccgatgaccctgtttatcctagcgagttcccgctatcttgtagttggggattattgcttcccagtgtgctttctaataggcacaaagagaagaactacaagcagcacctggatcatctttgggaagacgaaaaccgggttacttggcagccttatacgagacttagcgagaactttctccctgaagagattaggagtcagcgacggatggggaggttccgggggattttgattcaccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

251

Amino Acids

29.19

Weight (kDa)

6.53

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	444, 545
AclWI	GGATC	2 cut(s)	309, 633
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	25, 316
AcuI	CTGAAG	2 cut(s)	53, 717
AcvI	CACGTG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	348, 498
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	4 cut(s)	153, 163, 331, 511
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	621
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	4 cut(s)	76, 189, 200, 667
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	309, 633
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	1 cut(s)	445
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	616, 661
ApoI	RAATTY	2 cut(s)	25, 316
Asp700I	GAANNNNTTC	1 cut(s)	121
AsuC2I	CCSGG	2 cut(s)	650, 734
AsuHPI	GGTGA	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	399
BauI	CACGAG	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	628, 673
BccI	CCATC	1 cut(s)	715
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	623
BcnI	CCSGG	2 cut(s)	650, 734
BcoDI	GTCTC	4 cut(s)	76, 189, 200, 667
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	86, 534
BisI	GCNGC	3 cut(s)	445, 617, 662
BlsI	GCNGC	3 cut(s)	446, 618, 663
Bme1390I	CCNGG	3 cut(s)	623, 650, 734
BmiI	GGNNCC	1 cut(s)	731
BmrFI	CCNGG	3 cut(s)	623, 650, 734
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	645
BpuMI	CCSGG	2 cut(s)	650, 734
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 498
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	387, 415
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	1 cut(s)	726
BseLI	CCNNNNNNNGG	2 cut(s)	348, 498
BseMI	GCAATG	2 cut(s)	387, 415
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	3 cut(s)	116, 119, 156
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	2 cut(s)	628, 673
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	649, 733
BslI	CCNNNNNNNGG	2 cut(s)	348, 498
BsmAI	GTCTC	4 cut(s)	76, 189, 200, 667
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	301, 625
BspACI	CCGC	2 cut(s)	444, 545
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	731
BspPI	GGATC	2 cut(s)	309, 633
BsrDI	GCAATG	2 cut(s)	387, 415
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	2 cut(s)	301, 625
BssSI	CACGAG	1 cut(s)	424
Bst2BI	CACGAG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	2 cut(s)	211, 245
Bst6I	CTCTTC	3 cut(s)	93, 512, 693
BstBAI	YACGTR	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	290, 677
BstENI	CCTNNNNNAGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	726
BstKTI	GATC	2 cut(s)	304, 628
BstMAI	GTCTC	4 cut(s)	76, 189, 200, 667
BstMBI	GATC	2 cut(s)	301, 625
BstNI	CCWGG	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	621, 648, 732
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	628, 673
BstV2I	GAAGAC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	726
BtsIMutI	CAGTG	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	248, 369, 463
CviJI	RGCY	4 cut(s)	67, 447, 514, 664
CviKI_1	RGCY	4 cut(s)	67, 447, 514, 664
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	290, 677
DpnI	GATC	2 cut(s)	303, 627
DpnII	GATC	2 cut(s)	301, 625
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	3 cut(s)	93, 512, 693
EarI	CTCTTC	3 cut(s)	93, 512, 693
Eco57I	CTGAAG	2 cut(s)	53, 717
Eco72I	CACGTG	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	370
FaeI	CATG	3 cut(s)	251, 372, 466
FaiI	YATR	9 cut(s)	57, 249, 270, 306, 366, 370, 464, 483, 669
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	3 cut(s)	247, 368, 462
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	445, 617, 662
FokI	GGATG	1 cut(s)	733
Fsp4HI	GCNGC	3 cut(s)	445, 617, 662
FspBI	CTAG	2 cut(s)	86, 534
GluI	GCNGC	3 cut(s)	445, 617, 662
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	2 cut(s)	649, 733
Hin1II	CATG	3 cut(s)	251, 372, 466
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	709, 745
HpaII	CCGG	2 cut(s)	649, 733
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	3 cut(s)	16, 397, 407
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	3 cut(s)	16, 397, 407
Hpy99I	CGWCG	1 cut(s)	720
HpyAV	CCTTC	2 cut(s)	71, 159
HpyCH4III	ACNGT	2 cut(s)	211, 245
HpyCH4IV	ACGT	2 cut(s)	200, 393
HpyCH4V	TGCA	6 cut(s)	368, 380, 397, 420, 437, 497
HpyF3I	CTNAG	2 cut(s)	290, 677
HpySE526I	ACGT	2 cut(s)	200, 393
Hsp92II	CATG	3 cut(s)	251, 372, 466
Kzo9I	GATC	2 cut(s)	301, 625
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	2 cut(s)	628, 673
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	2 cut(s)	86, 534
MaeII	ACGT	2 cut(s)	200, 393
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	2 cut(s)	303, 627
MboI	GATC	2 cut(s)	301, 625
MboII	GAAGA	8 cut(s)	56, 110, 175, 448, 499, 616, 650, 710
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	4 cut(s)	25, 316, 354, 438
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	8 cut(s)	94, 97, 100, 134, 275, 420, 470, 720
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	9, 191, 357
MspI	CCGG	2 cut(s)	649, 733
MspR9I	CCNGG	3 cut(s)	623, 650, 734
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	623
NciI	CCSGG	2 cut(s)	650, 734
NdeII	GATC	2 cut(s)	301, 625
NlaIII	CATG	3 cut(s)	251, 372, 466
NlaIV	GGNNCC	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	446, 618, 663
PleI	GAGTC	1 cut(s)	717
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	717
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	621
PspCI	CACGTG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	731
PstNI	CAGNNNCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	9, 191, 357
SatI	GCNGC	3 cut(s)	445, 617, 662
Sau3AI	GATC	2 cut(s)	301, 625
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	3 cut(s)	623, 650, 734
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	8 cut(s)	75, 111, 123, 203, 311, 396, 624, 731
SfaNI	GCATC	1 cut(s)	421
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	4 cut(s)	25, 316, 354, 438
SsiI	CCGC	2 cut(s)	444, 545
SspMI	CTAG	2 cut(s)	86, 534
StyD4I	CCNGG	3 cut(s)	621, 648, 732
TaaI	ACNGT	2 cut(s)	211, 245
TaiI	ACGT	2 cut(s)	203, 396
TaqI	TCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	25, 316, 354, 438
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	3 cut(s)	9, 191, 357
Tru9I	TTAA	3 cut(s)	9, 191, 357
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	2 cut(s)	616, 661
TspGWI	ACGGA	2 cut(s)	331, 733
TspRI	CASTG	1 cut(s)	583
VneI	GTGCAC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	496
XapI	RAATTY	2 cut(s)	25, 316
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	2 cut(s)	86, 534
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.