Rh1BG097100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001459
Physical Location & Seq
Forward (+)
17063650 .. 17066070
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG097100.1

Sequence Viewer

Length: 243 bp
ATGGATGAAAACTCATCATCATCATCCATAATTAAGGACATAGTCTATATTACTGGGCTTAAGATTAGTGGGAAATTAGTGTTGAAGGAAGCGTCGGTGATCGTTGGTGACAAGGAGAATGATGAAACCGTCAATGTGCGGTATTATTGGCCACTAATGATCACAAAGCTGTTGGCTCAGCATAGCAACAGCAGGATTCACAATCATTCTTACAGCACGATCAGCAGCATGATGAGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.11

Weight (kDa)

8.02

Isoelectric Point (pI)

12.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 149
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 109, 119
BalI TGGCCA 1 cut(s) 151
BbvI GCAGC 1 cut(s) 237
BclI TGATCA 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 226
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 10, 23
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 151
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 99, 159, 219
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 190
BspTI CTTAAG 1 cut(s) 59
BsrI ACTGG 1 cut(s) 58
BssMI GATC 3 cut(s) 99, 159, 219
Bst4CI ACNGT 1 cut(s) 130
BstAFI CTTAAG 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 10, 23
BstKTI GATC 3 cut(s) 102, 162, 222
BstMBI GATC 3 cut(s) 99, 159, 219
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 10, 23
CseI GACGC 1 cut(s) 81
CviAII CATG 1 cut(s) 229
CviJI RGCY 4 cut(s) 58, 151, 169, 176
CviKI_1 RGCY 4 cut(s) 58, 151, 169, 176
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 101, 161, 221
DpnII GATC 3 cut(s) 99, 159, 219
EaeI YGGCCR 1 cut(s) 149
FaeI CATG 1 cut(s) 232
FaiI YATR 5 cut(s) 29, 41, 48, 183, 230
FatI CATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 10, 17
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 151
HgaI GACGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 232
HinfI GANTC 1 cut(s) 196
HphI GGTGA 2 cut(s) 109, 119
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 3 cut(s) 99, 159, 219
LpnPI CCDG 2 cut(s) 39, 178
Lsp1109I GCAGC 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 101, 161, 221
MboI GATC 3 cut(s) 99, 159, 219
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 2 cut(s) 30, 74
MluNI TGGCCA 1 cut(s) 151
MnlI CCTC 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 2 cut(s) 33, 60
Msp20I TGGCCA 1 cut(s) 151
MspCI CTTAAG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 3 cut(s) 99, 159, 219
NlaIII CATG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 227
PsyI GACNNNGTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 33, 60
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 3 cut(s) 99, 159, 219
SetI ASST 2 cut(s) 171, 239
SgeI CNNG 4 cut(s) 66, 124, 205, 229
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 30, 74
SsiI CCGC 1 cut(s) 139
TaaI ACNGT 1 cut(s) 130
TasI AATT 2 cut(s) 30, 74
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 33, 60
Tru9I TTAA 2 cut(s) 33, 60
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 21, 138
Tth111I GACNNNGTC 1 cut(s) 41
Vha464I CTTAAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.