Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004145.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

103866 .. 104875

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004145.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgacttctttcaaaactacaaaccgaatcgaaccgcctgtttcggctcggtccggaccggttccatcggttttcgtagcaaggcttttgggtcgatgtcatcatgacaatgctatggttcaggctcctatacatacttatagtgttgaggataatgtttttagagttcaaggaagaaccggtgatcgatgggacaggaagaaggatgcaaccatcaatgtaagagggttgggtgaggtgcctactagtcgcatgaagccagatggttatgctgttaagttcaattggttgagggaaacatatcaaactctacctcaaaatttagagccagatacattggctattcatgttaccgctttttgcctctacattgtaggcggggtattattagccactaatgatcacaagtatgtgaacttgtgctacttgaagagtttgcctagggagggacttaggcaatatgcatggggacatgcattcctcgctcacatgcactattgtatggtgtcttgtgcgtcgaatgacaacaagatgtctataggtgctcacatgttcatgctcatggtgtgggcgatcgagcatatcctagaaactcaactgccggaccttgaagcgtcgtcgctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

208

Amino Acids

23.55

Weight (kDa)

8.28

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	3 cut(s)	35, 354, 378
AcsI	RAATTY	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	549
AgeI	ACCGGT	2 cut(s)	58, 179
AgsI	TTSAA	5 cut(s)	13, 170, 283, 430, 611
AhlI	ACTAGT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	547
Aor13HI	TCCGGA	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	319
AsiGI	ACCGGT	2 cut(s)	58, 179
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	3 cut(s)	51, 56, 604
AsuHPI	GGTGA	2 cut(s)	194, 245
AvaII	GGWCC	3 cut(s)	51, 56, 604
AvrII	CCTAGG	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	547
BccI	CCATC	4 cut(s)	73, 183, 221, 257
BclI	TGATCA	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	3 cut(s)	246, 441, 587
BfmI	CTRYAG	2 cut(s)	537, 623
BlnI	CCTAGG	1 cut(s)	440
Bme18I	GGWCC	3 cut(s)	51, 56, 604
BmgT120I	GGNCC	3 cut(s)	51, 56, 604
BmiI	GGNNCC	3 cut(s)	63, 126, 240
BmsI	GCATC	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	3 cut(s)	53, 58, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse118I	RCCGGY	2 cut(s)	58, 179
BseAI	TCCGGA	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	576
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	2 cut(s)	58, 179
BshVI	ATCGAT	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	4 cut(s)	54, 59, 180, 602
BslFI	GGGAC	3 cut(s)	206, 462, 483
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmFI	GGGAC	3 cut(s)	206, 462, 483
BsmI	GAATGC	1 cut(s)	476
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	184, 400, 573
BspACI	CCGC	3 cut(s)	35, 354, 378
BspDI	ATCGAT	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	63, 126, 240
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	2 cut(s)	58, 179
BssAI	RCCGGY	2 cut(s)	58, 179
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	3 cut(s)	184, 400, 573
BssT1I	CCWWGG	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	187, 403, 576
BstMBI	GATC	3 cut(s)	184, 400, 573
BstMCI	CGRYCG	1 cut(s)	576
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNSI	RCATGY	3 cut(s)	476, 493, 553
BstSFI	CTRYAG	2 cut(s)	537, 623
Bsu15I	ATCGAT	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	58, 179
Cfr13I	GGNCC	3 cut(s)	51, 56, 604
ClaI	ATCGAT	1 cut(s)	187
CpoI	CGGWCCG	2 cut(s)	51, 56
CseI	GACGC	2 cut(s)	504, 603
CspAI	ACCGGT	2 cut(s)	58, 179
CspI	CGGWCCG	2 cut(s)	51, 56
CviAII	CATG	9 cut(s)	104, 253, 347, 465, 473, 490, 550, 556, 562
CviJI	RGCY	7 cut(s)	47, 85, 125, 259, 328, 341, 392
CviKI_1	RGCY	7 cut(s)	47, 85, 125, 259, 328, 341, 392
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	3 cut(s)	186, 402, 575
DpnII	GATC	3 cut(s)	184, 400, 573
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	440
Eco47I	GGWCC	3 cut(s)	51, 56, 604
EcoT14I	CCWWGG	1 cut(s)	440
EcoT22I	ATGCAT	2 cut(s)	466, 478
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	9 cut(s)	107, 256, 350, 468, 476, 493, 553, 559, 565
FaqI	GGGAC	3 cut(s)	206, 462, 483
FatI	CATG	9 cut(s)	103, 252, 346, 464, 472, 489, 549, 555, 561
FauI	CCCGC	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	400
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	3 cut(s)	246, 441, 587
HapII	CCGG	4 cut(s)	54, 59, 180, 602
HgaI	GACGC	2 cut(s)	504, 603
Hin1II	CATG	9 cut(s)	107, 256, 350, 468, 476, 493, 553, 559, 565
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	4 cut(s)	54, 59, 180, 602
HphI	GGTGA	2 cut(s)	194, 245
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188III	TCNNGA	2 cut(s)	54, 104
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	3 cut(s)	520, 619, 622
HpyAV	CCTTC	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	209, 464, 476, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	452
Hsp92II	CATG	9 cut(s)	107, 256, 350, 468, 476, 493, 553, 559, 565
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	184, 400, 573
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	51, 67, 72, 107, 181, 193, 273, 342, 615
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	246, 441, 587
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	186, 402, 575
MboI	GATC	3 cut(s)	184, 400, 573
MboII	GAAGA	3 cut(s)	186, 211, 442
MfeI	CAATTG	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	2 cut(s)	283, 319
MnlI	CCTC	8 cut(s)	142, 218, 229, 285, 324, 374, 439, 491
Mph1103I	ATGCAT	2 cut(s)	466, 478
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	4 cut(s)	108, 408, 554, 560
MspI	CCGG	4 cut(s)	54, 59, 180, 602
MunI	CAATTG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	3 cut(s)	184, 400, 573
NlaIII	CATG	9 cut(s)	107, 256, 350, 468, 476, 493, 553, 559, 565
NlaIV	GGNNCC	3 cut(s)	63, 126, 240
NsiI	ATGCAT	2 cut(s)	466, 478
NspI	RCATGY	3 cut(s)	476, 493, 553
PagI	TCATGA	1 cut(s)	103
PciI	ACATGT	1 cut(s)	549
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	27
PinAI	ACCGGT	2 cut(s)	58, 179
Ple19I	CGATCG	1 cut(s)	576
PscI	ACATGT	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	63, 126, 240
PspPI	GGNCC	3 cut(s)	51, 56, 604
PsrI	GAACNNNNNNTAC	2 cut(s)	407, 439
PvuI	CGATCG	1 cut(s)	576
RseI	CAYNNNNRTG	4 cut(s)	108, 408, 554, 560
Rsr2I	CGGWCCG	2 cut(s)	51, 56
RsrII	CGGWCCG	2 cut(s)	51, 56
SaqAI	TTAA	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	184, 400, 573
Sau96I	GGNCC	3 cut(s)	51, 56, 604
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	4 cut(s)	240, 316, 544, 609
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	2 cut(s)	537, 623
SinI	GGWCC	3 cut(s)	51, 56, 604
SmiMI	CAYNNNNRTG	4 cut(s)	108, 408, 554, 560
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	2 cut(s)	283, 319
SsiI	CCGC	3 cut(s)	35, 354, 378
SspMI	CTAG	3 cut(s)	246, 441, 587
StyI	CCWWGG	1 cut(s)	440
TaqI	TCGA	5 cut(s)	30, 94, 187, 518, 576
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	283, 319
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	269, 335, 544
VpaK11BI	GGWCC	3 cut(s)	51, 56, 604
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	3 cut(s)	476, 493, 553
XmaJI	CCTAGG	1 cut(s)	440
XspI	CTAG	3 cut(s)	246, 441, 587
Zsp2I	ATGCAT	2 cut(s)	466, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.