RLG00000013271

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001459
Physical Location & Seq
Reverse (-)
28997901 .. 29001367
3467 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013271

Sequence Viewer

Length: 930 bp
ATGGAAAAGCTTGAAGGCATAAAGGAGTATGCATGGGGTGCTGCTATGTTGGCTCATCTACATGTTTCACTGGGGATTTATAAGCAAGAGAATTTACCTGGCCCAAAAACTATATTGATGGGGCACAGCTATGCACTCATGGTATTCGCAATGGAGCGTATTCCTAAGTTGATTGTATGGCAGCCATACCAAAGGCTACCGTGTGATTTTCATTTTCTTCCCCAGTACTGTGCCGGTCAGGAGAAAATCTGCATGTCCCGAACAATCCTTCTTTGCTTTGAGAAAGCAGTGTATCATCGTCCTGATTTAAGTCCAAAGCAATTTGGCATCCAGAACGTGAATACTAGTAAGTTGCGCGGCATTATTGAGCTGGACTGCAAACGGTGGACCATGAAAAAAGAAATGGAGATCAACCCAGTGAATAATGCTATAAAGCTCGAGTCCCAGGTTTCTTCTTTCACAAATGAATGTGACGATGTGCTTAATGACCCTTCTGGGCATTTACTTGATGACCACCAAATTGTTAAACGCCCTTCTACTTCCACAGATGTTTCATTAACTCCGTCCTCACCACCTTGGGCGCCCCCTCAGGAATGTGACCATGTGCTTAATGACCTTAATGAACTTAATCATCTACTTCAAGAGTCTGACCCAAGTGCTTCCTCTGCTCAACCATCAACTGTGCACGATGATGTGGATTCTGCCAAGGAGGCTATTAGAAATGTACTTTGTCAAGGTCTTGATGCTTTAAAAAACTCTCAGGTCCGTAATGCTTTTCTTGCTTCTTCAGAGGTTCTTTTGTCAGCTGCTGTAGTCTCATCTGATTTGAAGACTGTTGAAGAAACTTCAGAACCATGCTTCCAGGTGAAAGATATTCCTACATCTACGGAACTCTCCTTTGAAGAAATTCCTGAAGAAGCAAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

310

Amino Acids

34.66

Weight (kDa)

5.17

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 1 cut(s) 357
AciI CCGC 1 cut(s) 357
AcsI RAATTY 2 cut(s) 91, 906
AcuI CTGAAG 2 cut(s) 771, 831
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 2 cut(s) 227, 726
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 5 cut(s) 14, 641, 829, 839, 902
AhlI ACTAGT 1 cut(s) 344
AjnI CCWGG 3 cut(s) 97, 444, 861
AloI GAACNNNNNNTCC 2 cut(s) 843, 875
AluBI AGCT 5 cut(s) 10, 129, 370, 436, 806
AluI AGCT 5 cut(s) 10, 129, 370, 436, 806
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 820
Alw44I GTGCAC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 41, 181, 806
ApoI RAATTY 2 cut(s) 91, 906
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 2 cut(s) 357, 583
AspS9I GGNCC 3 cut(s) 101, 387, 763
AsuHPI GGTGA 2 cut(s) 561, 877
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 2 cut(s) 387, 763
AxyI CCTNAGG 1 cut(s) 588
BaeGI GKGCMC 2 cut(s) 126, 687
BanI GGYRCC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 836
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 28, 193, 793
BccI CCATC 2 cut(s) 112, 682
BciT130I CCWGG 3 cut(s) 99, 446, 863
BcoDI GTCTC 1 cut(s) 820
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 810
BfoI RGCGCY 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 710
BisI GCNGC 4 cut(s) 42, 182, 358, 807
BlsI GCNGC 4 cut(s) 43, 183, 359, 808
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 3 cut(s) 99, 446, 863
Bme18I GGWCC 2 cut(s) 387, 763
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 3 cut(s) 101, 387, 763
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 3 cut(s) 99, 446, 863
BmrI ACTGGG 3 cut(s) 80, 217, 410
BmsI GCATC 2 cut(s) 336, 733
BmuI ACTGGG 3 cut(s) 80, 217, 410
BpiI GAAGAC 1 cut(s) 836
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 444, 575, 705
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 75, 223, 416
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 3 cut(s) 99, 446, 863
BseDI CCNNGG 3 cut(s) 444, 575, 705
BseGI GGATG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 602, 773
BseNI ACTGG 3 cut(s) 75, 223, 416
BseSI GKGCMC 2 cut(s) 126, 687
BseXI GCAGC 3 cut(s) 28, 193, 793
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 241, 427
BsmAI GTCTC 1 cut(s) 820
BsmFI GGGAC 2 cut(s) 241, 427
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 126, 687
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 1 cut(s) 357
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 601, 772
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 582
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 75, 223, 416
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 444, 575, 705
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 2 cut(s) 575, 705
Bst2UI CCWGG 3 cut(s) 99, 446, 863
Bst4CI ACNGT 5 cut(s) 201, 230, 384, 682, 835
BstACI GRCGYC 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 165, 588, 759
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 2 cut(s) 357, 583
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 1 cut(s) 820
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 5 cut(s) 38, 50, 665, 710, 779
BstNI CCWGG 3 cut(s) 99, 446, 863
BstNSI RCATGY 2 cut(s) 65, 256
BstSCI CCNGG 3 cut(s) 97, 444, 861
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 2 cut(s) 126, 687
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 28, 193, 793
BstV2I GAAGAC 1 cut(s) 836
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 68, 294, 423
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 2 cut(s) 357, 583
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 101, 387, 763
Csp6I GTAC 2 cut(s) 226, 725
CviAII CATG 7 cut(s) 33, 62, 139, 253, 391, 602, 855
CviQI GTAC 2 cut(s) 226, 725
DdeI CTNAG 3 cut(s) 165, 588, 759
DinI GGCGCC 1 cut(s) 582
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DraI TTTAAA 1 cut(s) 750
Eco130I CCWWGG 2 cut(s) 575, 705
Eco47I GGWCC 2 cut(s) 387, 763
Eco57I CTGAAG 2 cut(s) 771, 831
Eco81I CCTNAGG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 3 cut(s) 97, 444, 861
EcoT14I CCWWGG 2 cut(s) 575, 705
EcoT22I ATGCAT 1 cut(s) 34
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 575, 705
FaeI CATG 7 cut(s) 36, 65, 142, 256, 394, 605, 858
FaqI GGGAC 2 cut(s) 241, 427
FatI CATG 7 cut(s) 32, 61, 138, 252, 390, 601, 854
Fnu4HI GCNGC 4 cut(s) 42, 182, 358, 807
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 42, 182, 358, 807
FspBI CTAG 1 cut(s) 345
GlaI GCGC 2 cut(s) 356, 582
GluI GCNGC 4 cut(s) 42, 182, 358, 807
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 357, 583
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 7 cut(s) 36, 65, 142, 256, 394, 605, 858
Hin6I GCGC 2 cut(s) 355, 581
HinP1I GCGC 2 cut(s) 355, 581
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 440, 644, 698
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 561, 877
Hpy166II GTNNAC 2 cut(s) 387, 685
Hpy188I TCNGA 4 cut(s) 649, 790, 823, 850
Hpy188III TCNNGA 8 cut(s) 239, 258, 302, 331, 590, 641, 740, 911
Hpy8I GTNNAC 2 cut(s) 387, 685
HpyAV CCTTC 5 cut(s) 8, 278, 501, 543, 918
HpyCH4III ACNGT 5 cut(s) 201, 230, 384, 682, 835
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 32, 134, 252, 378, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 50, 665, 710, 779
HpyF3I CTNAG 3 cut(s) 165, 588, 759
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 7 cut(s) 36, 65, 142, 256, 394, 605, 858
HspAI GCGC 2 cut(s) 355, 581
KasI GGCGCC 1 cut(s) 580
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 3 cut(s) 28, 193, 793
LweI GCATC 2 cut(s) 336, 733
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 470, 596
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 7 cut(s) 209, 444, 777, 841, 851, 914, 926
MhlI GDGCHC 2 cut(s) 126, 687
MluCI AATT 4 cut(s) 91, 320, 519, 906
Mly113I GGCGCC 1 cut(s) 581
MlyI GAGTC 2 cut(s) 449, 653
MnlI CCTC 5 cut(s) 577, 597, 673, 703, 784
Mph1103I ATGCAT 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 8 cut(s) 308, 483, 525, 557, 609, 618, 627, 749
MslI CAYNNNNRTG 3 cut(s) 60, 129, 690
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 99, 446, 863
MvaI CCWGG 3 cut(s) 99, 446, 863
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 5 cut(s) 38, 50, 665, 710, 779
NarI GGCGCC 1 cut(s) 581
NdeII GATC 1 cut(s) 408
NlaIII CATG 7 cut(s) 36, 65, 142, 256, 394, 605, 858
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 2 cut(s) 470, 596
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 2 cut(s) 65, 256
PaeR7I CTCGAG 1 cut(s) 437
PciI ACATGT 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 1 cut(s) 698
PkrI GCNGC 4 cut(s) 43, 183, 359, 808
PleI GAGTC 2 cut(s) 448, 652
PluTI GGCGCC 1 cut(s) 584
PpsI GAGTC 2 cut(s) 448, 652
PscI ACATGT 1 cut(s) 61
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 3 cut(s) 97, 444, 861
PspGI CCWGG 3 cut(s) 97, 444, 861
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 3 cut(s) 101, 387, 763
PspXI VCTCGAGB 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 809
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 227, 726
RsaNI GTAC 2 cut(s) 226, 725
RseI CAYNNNNRTG 3 cut(s) 60, 129, 690
SaqAI TTAA 8 cut(s) 308, 483, 525, 557, 609, 618, 627, 749
SatI GCNGC 4 cut(s) 42, 182, 358, 807
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 3 cut(s) 101, 387, 763
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 2 cut(s) 449, 653
ScrFI CCNGG 3 cut(s) 99, 446, 863
SduI GDGCHC 2 cut(s) 126, 687
SfaNI GCATC 2 cut(s) 336, 733
SfcI CTRYAG 1 cut(s) 810
SfoI GGCGCC 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 2 cut(s) 387, 763
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 3 cut(s) 60, 129, 690
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 4 cut(s) 91, 320, 519, 906
SsiI CCGC 1 cut(s) 357
SspDI GGCGCC 1 cut(s) 580
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 3 cut(s) 97, 444, 861
StyI CCWWGG 2 cut(s) 575, 705
TaaI ACNGT 5 cut(s) 201, 230, 384, 682, 835
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 438
TasI AATT 4 cut(s) 91, 320, 519, 906
TatI WGTACW 2 cut(s) 225, 724
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 8 cut(s) 308, 483, 525, 557, 609, 618, 627, 749
Tru9I TTAA 8 cut(s) 308, 483, 525, 557, 609, 618, 627, 749
TscAI CASTG 3 cut(s) 75, 294, 423
TseFI GTSAC 2 cut(s) 470, 596
TseI GCWGC 3 cut(s) 41, 181, 806
Tsp45I GTSAC 2 cut(s) 470, 596
TspDTI ATGAA 5 cut(s) 200, 407, 480, 543, 636
TspGWI ACGGA 3 cut(s) 552, 755, 902
TspRI CASTG 3 cut(s) 75, 294, 423
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 387, 763
XapI RAATTY 2 cut(s) 91, 906
XceI RCATGY 2 cut(s) 65, 256
XhoI CTCGAG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 1 cut(s) 345
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.