Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

46991794 .. 46992165

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG336600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAAAGAGGGTGGTAAATCTATAACTTTTGAAGGGTTACGAAAGAAGTTCGAAAAGGTACCCAAAGATATAGATGAGGAAAAATTTGATAGACATGTTAGAGCCTTTGCTCTCTATGTTGTTAACATGACAATCACGGTGACCACTGAGAATAAATATGCGAGTGTGGCTTGCTTAAGGGCCTTTTCTGATATTCACAAAATAAAGGACTTCTCATGGGGAGTTGCAATGCTTTCCCAAGTCCATTACAGTTTGATGAAGTATGAGACCAAGAAGAGGGCTAATATTGGAGGTCACATGTACTTCTTGATGATGTGGGCATTGGAGCATCACCCTGCCTTTCGAGATAGTCTCGGGGTTCCGGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

123

Amino Acids

14.26

Weight (kDa)

9.35

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	29 - 115	1.7e-09	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	2 cut(s)	60, 302
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflII	CTTAAG	1 cut(s)	175
AflIII	ACRYGT	2 cut(s)	94, 297
AgsI	TTSAA	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	260, 356
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	83
Asp718I	GGTACC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	151, 323
AsuII	TTCGAA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	260, 356
BfmI	CTRYAG	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	60, 360
BmsI	GCATC	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
Bpu14I	TTCGAA	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	260, 356
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	51
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	60, 360
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	139, 251
Bst6I	CTCTTC	1 cut(s)	269
BstAFI	CTTAAG	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	260, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	98, 301
BstPI	GGTNACC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	59, 301
CviAII	CATG	4 cut(s)	95, 127, 216, 298
CviJI	RGCY	4 cut(s)	104, 170, 182, 281
CviKI_1	RGCY	4 cut(s)	104, 170, 182, 281
CviQI	GTAC	2 cut(s)	59, 301
DdeI	CTNAG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	139
FaeI	CATG	4 cut(s)	98, 130, 219, 301
FaiI	YATR	9 cut(s)	23, 71, 96, 117, 128, 159, 217, 264, 299
FatI	CATG	4 cut(s)	94, 126, 215, 297
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	4 cut(s)	98, 130, 219, 301
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	151, 323
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	307, 344
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	139, 251
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	98, 130, 219, 301
KpnI	GGTACC	1 cut(s)	62
KspAI	GTTAAC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	1 cut(s)	348
LweI	GCATC	1 cut(s)	337
MaeIII	GTNAC	3 cut(s)	36, 139, 293
MboII	GAAGA	1 cut(s)	286
MluCI	AATT	1 cut(s)	83
MnlI	CCTC	3 cut(s)	70, 270, 284
MseI	TTAA	2 cut(s)	123, 176
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	98, 130, 219, 301
NlaIV	GGNNCC	2 cut(s)	60, 360
NmuCI	GTSAC	2 cut(s)	139, 293
NspI	RCATGY	2 cut(s)	98, 301
NspV	TTCGAA	1 cut(s)	51
PciI	ACATGT	2 cut(s)	94, 297
PscI	ACATGT	2 cut(s)	94, 297
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	60, 360
PspPI	GGNCC	1 cut(s)	180
RsaI	GTAC	2 cut(s)	60, 302
RsaNI	GTAC	2 cut(s)	59, 301
SaqAI	TTAA	2 cut(s)	123, 176
Sau96I	GGNCC	1 cut(s)	180
SetI	ASST	2 cut(s)	60, 295
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	83
SspI	AATATT	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	139, 251
TaqI	TCGA	2 cut(s)	51, 343
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	123, 176
Tru9I	TTAA	2 cut(s)	123, 176
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	139, 293
Tsp45I	GTSAC	2 cut(s)	139, 293
TspDTI	ATGAA	2 cut(s)	17, 272
TspRI	CASTG	1 cut(s)	151
Vha464I	CTTAAG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	2 cut(s)	98, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.