Rmu_co8191550.1_g000001

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8191550.1
OG0001459
Physical Location & Seq
Reverse (-)
1 .. 592
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8191550.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atgttgaagctaaattggttgagagaattcttttccaaatgtcctgacgatgcatcagttgaagagacggcgcgccatacacgggcttacctcctatatcttgtgggatgtacaatattttccacaactactgggaataaagtctctgtttcatttctcacactatttgagaattttgatgaagctggaagatttgcatggggtgcagcagcattggcgttcctctatagagctcttggtaacgcctcccttaaatctcaaggcacaattagtggctctttgacactactgcagtgttggagttattatcatctgaatgttggccaaccaaagttcaatgaagagccaaaccagggttgttttccatttgctcttaggtggaaaggacgatctagtggaacaagatcgaaaactaacataattgcctaccgcaaggccttggattcccttcaacattatgat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

154

Amino Acids

17.38

Weight (kDa)

9.12

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 73
AciI CCGC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 26, 172
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 2 cut(s) 82, 353
AgsI TTSAA 4 cut(s) 7, 62, 337, 452
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 3 cut(s) 10, 185, 233
AluI AGCT 3 cut(s) 10, 185, 233
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 59, 148
AoxI GGCC 2 cut(s) 322, 435
ApeKI GCWGC 2 cut(s) 206, 209
ApoI RAATTY 2 cut(s) 26, 172
AscI GGCGCGCC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 73, 75
BalI TGGCCA 1 cut(s) 324
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 218, 221
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 59, 148
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 226, 290
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
Bme1390I CCNGG 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 40, 62
BmuI ACTGGG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 352, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 353
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 352, 438
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 82, 353
BseNI ACTGG 1 cut(s) 136
BsePI GCGCGC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 218, 221
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 324, 437
BsiHKAI GWGCWC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 82, 353
BsmAI GTCTC 2 cut(s) 59, 148
BsmBI CGTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 324, 437
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 110
Bsp143I GATC 2 cut(s) 389, 404
BspACI CCGC 1 cut(s) 430
BspANI GGCC 2 cut(s) 324, 437
BspFNI CGCG 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 336
BsrGI TGTACA 1 cut(s) 110
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 352, 438
BssHII GCGCGC 1 cut(s) 71
BssMI GATC 2 cut(s) 389, 404
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 57, 336
BstAPI GCANNNNNTGC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 2 cut(s) 73, 75
BstKTI GATC 2 cut(s) 392, 407
BstMAI GTCTC 2 cut(s) 59, 148
BstMBI GATC 2 cut(s) 389, 404
BstMWI GCNNNNNNNGC 2 cut(s) 203, 215
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 2 cut(s) 226, 290
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 218, 221
BsuRI GGCC 2 cut(s) 324, 437
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 2 cut(s) 73, 75
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 198
CviJI RGCY 8 cut(s) 10, 86, 185, 233, 276, 324, 346, 437
CviKI_1 RGCY 8 cut(s) 10, 86, 185, 233, 276, 324, 346, 437
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 391, 406
DpnII GATC 2 cut(s) 389, 404
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 57, 336
EarI CTCTTC 2 cut(s) 57, 336
Ecl136II GAGCTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 437
Eco24I GRGCYC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 201
FaiI YATR 6 cut(s) 78, 97, 199, 228, 419, 459
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 207, 210
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 207, 210
FspBI CTAG 1 cut(s) 393
GlaI GCGC 2 cut(s) 72, 74
GluI GCNGC 2 cut(s) 207, 210
HaeIII GGCC 2 cut(s) 324, 437
HhaI GCGC 2 cut(s) 73, 75
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 2 cut(s) 71, 73
HinP1I GCGC 2 cut(s) 71, 73
HinfI GANTC 1 cut(s) 443
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 53, 197, 206, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 215
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 2 cut(s) 71, 73
Kzo9I GATC 2 cut(s) 389, 404
LguI GCTCTTC 1 cut(s) 336
LpnPI CCDG 5 cut(s) 57, 117, 171, 338, 365
Lsp1109I GCAGC 2 cut(s) 218, 221
LweI GCATC 2 cut(s) 40, 62
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 391, 406
MboI GATC 2 cut(s) 389, 404
MboII GAAGA 3 cut(s) 74, 201, 353
MhlI GDGCHC 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 5 cut(s) 13, 26, 172, 267, 420
MluNI TGGCCA 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 3 cut(s) 101, 233, 256
Mox20I TGGCCA 1 cut(s) 324
Mph1103I ATGCAT 1 cut(s) 55
MscI TGGCCA 1 cut(s) 324
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 203, 215
NdeII GATC 2 cut(s) 389, 404
NlaIII CATG 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 55
PalAI GGCGCGCC 1 cut(s) 71
PauI GCGCGC 1 cut(s) 71
PceI AGGCCT 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 2 cut(s) 208, 211
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PstI CTGCAG 1 cut(s) 294
PteI GCGCGC 1 cut(s) 71
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 2 cut(s) 389, 404
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 235
SetI ASST 5 cut(s) 12, 93, 187, 235, 380
SfaNI GCATC 2 cut(s) 40, 62
SfcI CTRYAG 2 cut(s) 226, 290
SgsI GGCGCGCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 5 cut(s) 13, 26, 172, 267, 420
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 1 cut(s) 430
SspI AATATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 235
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 438
TaqI TCGA 1 cut(s) 407
TasI AATT 5 cut(s) 13, 26, 172, 267, 420
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 299
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 3 cut(s) 141, 195, 354
TspRI CASTG 1 cut(s) 299
XapI RAATTY 2 cut(s) 26, 172
XspI CTAG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.