Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

23039555 .. 23066746

Gene Structure 27192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTTCAGGCTCTTATACATACTTACAGTGTTGAGGATAATGTTTTTACAATTCAAGGTAGGGATATATTTTTTGGTTTAGAAGACATAGTCTATATTACTGGGCTTAAGATTAGTGGGGAATCAGTGGTGAAGGAAGAACCGGTGATCGATGGTGACAGGAAGAAGGATGCAACCATCAATGTAAGAGGGTTGGGTGAGGTGCCTACTAGTCGCATGAAGCCAGATGGTTATGCTGTTGAGTTCAATTGGTTGAGGGAAACATATCAAACTCTACCTCAAAATGTAGAACCAGATACATTGGCTATTCATGTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

106

Amino Acids

11.94

Weight (kDa)

4.66

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AflII	CTTAAG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	56, 247
AhlI	ACTAGT	1 cut(s)	209
AsiGI	ACCGGT	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	142, 157, 167, 209
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	3 cut(s)	146, 185, 221
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	90
Bsa29I	ATCGAT	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	202
BshTI	ACCGGT	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	34, 132
Cfr10I	RCCGGY	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	150
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	2 cut(s)	217, 311
CviJI	RGCY	4 cut(s)	11, 106, 223, 305
CviKI_1	RGCY	4 cut(s)	11, 106, 223, 305
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
FaeI	CATG	2 cut(s)	220, 314
FaiI	YATR	9 cut(s)	17, 21, 68, 89, 96, 218, 234, 265, 312
FatI	CATG	2 cut(s)	216, 310
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	210
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	2 cut(s)	220, 314
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	4 cut(s)	142, 157, 167, 209
HpyAV	CCTTC	2 cut(s)	127, 160
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	220, 314
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	5 cut(s)	87, 145, 156, 237, 306
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	155, 313
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	3 cut(s)	95, 149, 175
MfeI	CAATTG	1 cut(s)	247
MluCI	AATT	2 cut(s)	51, 247
MnlI	CCTC	5 cut(s)	28, 182, 193, 249, 288
MseI	TTAA	2 cut(s)	108, 319
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	247
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	220, 314
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	155, 313
PfeI	GAWTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	108, 319
Sau3AI	GATC	1 cut(s)	147
SetI	ASST	3 cut(s)	61, 204, 280
SfaNI	GCATC	1 cut(s)	160
SgeI	CNNG	9 cut(s)	20, 68, 114, 155, 172, 222, 229, 236, 305
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	2 cut(s)	51, 247
SspMI	CTAG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	51, 247
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	108, 319
Tru9I	TTAA	2 cut(s)	108, 319
TscAI	CASTG	2 cut(s)	34, 132
TseFI	GTSAC	2 cut(s)	155, 313
Tsp45I	GTSAC	2 cut(s)	155, 313
TspDTI	ATGAA	2 cut(s)	233, 299
TspRI	CASTG	2 cut(s)	34, 132
Tth111I	GACNNNGTC	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	107
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.