Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000834.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

85217 .. 85609

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000834.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ctggtgatcgatggtgacaggaagaaggatgcaaccatcaatgtaagagtgttgggtgaggtgcctactagtcgcatgaagccagatggttatgctgttgagttcaattggttgagggaaacatatcaaactctacctcaaaatgtagagccagatacattggctattcatgttaccgctttttgcctctacattgtaggcgcggtattattagccactaatgatcacaagtatgtgaacttgtgctacttgaagagtttgtctagggagggaattaggcaatatgcatggggacatgcaatcctcgcccacatgcactattgtatggtgtcttgtgcgtcgaatgacaacaagacgtctataggtgctcacatgttcatgctcatggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

130

Amino Acids

14.69

Weight (kDa)

7.16

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	61
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	177, 203
AcyI	GRCGYC	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	106, 253
AhlI	ACTAGT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	16, 26, 68
BanI	GGYRCC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	370
BccI	CCATC	3 cut(s)	5, 44, 80
BclI	TGATCA	1 cut(s)	223
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	2 cut(s)	69, 264
BfmI	CTRYAG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	6, 223
BspACI	CCGC	2 cut(s)	177, 203
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
BssMI	GATC	2 cut(s)	6, 223
BssNI	GRCGYC	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	9, 226
BstMBI	GATC	2 cut(s)	6, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	3 cut(s)	299, 316, 376
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	327
CviAII	CATG	8 cut(s)	76, 170, 288, 296, 313, 373, 379, 385
CviJI	RGCY	4 cut(s)	82, 151, 164, 215
CviKI_1	RGCY	4 cut(s)	82, 151, 164, 215
DpnI	GATC	2 cut(s)	8, 225
DpnII	GATC	2 cut(s)	6, 223
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	8 cut(s)	79, 173, 291, 299, 316, 376, 382, 388
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	8 cut(s)	75, 169, 287, 295, 312, 372, 378, 384
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	1 cut(s)	41
FspBI	CTAG	2 cut(s)	69, 264
GlaI	GCGC	1 cut(s)	202
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	8 cut(s)	79, 173, 291, 299, 316, 376, 382, 388
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HphI	GGTGA	3 cut(s)	16, 26, 68
Hpy166II	GTNNAC	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	4 cut(s)	32, 287, 299, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	8 cut(s)	79, 173, 291, 299, 316, 376, 382, 388
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	6, 223
LpnPI	CCDG	3 cut(s)	4, 96, 165
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	69, 264
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	14, 172
MalI	GATC	2 cut(s)	8, 225
MboI	GATC	2 cut(s)	6, 223
MboII	GAAGA	2 cut(s)	34, 265
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	2 cut(s)	106, 273
MnlI	CCTC	6 cut(s)	52, 108, 147, 197, 262, 314
Mph1103I	ATGCAT	1 cut(s)	289
MslI	CAYNNNNRTG	3 cut(s)	231, 377, 383
MunI	CAATTG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	2 cut(s)	6, 223
NlaIII	CATG	8 cut(s)	79, 173, 291, 299, 316, 376, 382, 388
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	3 cut(s)	299, 316, 376
PciI	ACATGT	1 cut(s)	372
PscI	ACATGT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	63
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
RseI	CAYNNNNRTG	3 cut(s)	231, 377, 383
Sau3AI	GATC	2 cut(s)	6, 223
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	4 cut(s)	63, 139, 359, 367
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	3 cut(s)	231, 377, 383
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	2 cut(s)	106, 273
SsiI	CCGC	2 cut(s)	177, 203
SspMI	CTAG	2 cut(s)	69, 264
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	9, 341
TasI	AATT	2 cut(s)	106, 273
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	92, 158, 367
XceI	RCATGY	3 cut(s)	299, 316, 376
XspI	CTAG	2 cut(s)	69, 264
ZraI	GACGTC	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.