Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

17331142 .. 17331576

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG098700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTTGATGCTCTTGTCAGATACTATGACAAAGAAAGCATGTGTTTTAAAGTTGGGAACAAATCTTTATTTTTTGGTTTAGAAGATGTCATTTACATCACTGGGCTTAGGATAGAAGACAAGCTAGTGATAAAAGGAGACGTGAAAATTGTAAGGGACCTAGAGAACAACCAGTCTGTTACCATACAAGGGTTGGAGCAAGTGAATAGAGACTTGGTTACAGGTAAGTCTGTGAAGTTTGAAGGGTTACAAAAGACATTCTACACTATACCCGATGATGTAGAGGTAAACAGCGACAGATTTGGTGATTATGTTAGAGCATTTGTGCTTTATGTAATAGGGACGGTACTATTACATACTACAGATCATGAAACTGTGACTTTAAGCTACTTGGAGGCTTTGTCAGACATTGGGGAAATAAGGAACCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

144

Amino Acids

16.4

Weight (kDa)

4.8

Isoelectric Point (pI)

18.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1985	PF09331	9 - 141	1e-06	Domain of unknown function (DUF1985)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	242
AjiI	CACGTC	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	124, 387
AluI	AGCT	2 cut(s)	124, 387
Alw26I	GTCTC	2 cut(s)	132, 204
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	132, 204
BfaI	CTAG	2 cut(s)	125, 161
BfmI	CTRYAG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	158, 425
BmrI	ACTGGG	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	106, 172
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	106, 172
BslFI	GGGAC	2 cut(s)	170, 355
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	132, 204
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	170, 355
Bsp143I	GATC	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	158, 425
BsrI	ACTGG	2 cut(s)	106, 172
BssMI	GATC	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	346, 376
BstDEI	CTNAG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	132, 204
BstMBI	GATC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	99
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	2 cut(s)	40, 368
CviJI	RGCY	4 cut(s)	106, 124, 387, 398
CviKI_1	RGCY	4 cut(s)	106, 124, 387, 398
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraI	TTTAAA	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	43, 371
FaiI	YATR	9 cut(s)	27, 41, 185, 269, 312, 333, 357, 369, 433
FaqI	GGGAC	2 cut(s)	170, 355
FatI	CATG	2 cut(s)	39, 367
FspBI	CTAG	2 cut(s)	125, 161
Hin1II	CATG	2 cut(s)	43, 371
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	20, 406
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	346, 376
HpyCH4IV	ACGT	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	43, 371
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	3 cut(s)	87, 185, 207
MaeI	CTAG	2 cut(s)	125, 161
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	4 cut(s)	178, 217, 246, 376
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	2 cut(s)	95, 128
MluCI	AATT	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	277, 388
MseI	TTAA	2 cut(s)	48, 383
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	43, 371
NlaIV	GGNNCC	2 cut(s)	158, 425
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	158, 425
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	48, 383
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	157
SetI	ASST	7 cut(s)	126, 144, 162, 226, 288, 389, 429
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	125, 161
TaaI	ACNGT	2 cut(s)	346, 376
TaiI	ACGT	1 cut(s)	144
TasI	AATT	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	48, 383
Tru9I	TTAA	2 cut(s)	48, 383
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	125, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.