Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000056.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

15108 .. 15572

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000056.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggctgctgataggggagagattattcctaaggaaaacttagctattttggctcaatggaaggtggacgatagagtccttgcagcattagaggggacgaggttcagttatttatatgatttagcagtgaaggtgggcaaaaatcagcatgtcaatagcatgatagatgctcttgtgaagcattatgacaaaaatgacatgtgtttaaaagtccaggaccagcacttattctttggattagaagacgtgctattcattagtgggcttcaggtggaggggaagctagtgactaagggagggatagaagaagccatccaggtaagtagagtccaagatgaagaaggtaatagatatgtagaatttttgggtaatgtgccatctgagtacatgaaggagggcggcaaagctataacttttgaagggttgcgaaggatgttcgagaaggtacccagagatgtcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

154

Amino Acids

17.45

Weight (kDa)

5.15

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	386, 447
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	419
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	213, 315
AluBI	AGCT	3 cut(s)	44, 283, 407
AluI	AGCT	3 cut(s)	44, 283, 407
ApeKI	GCWGC	2 cut(s)	5, 83
ApoI	RAATTY	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	320, 385
BciT130I	CCWGG	2 cut(s)	215, 317
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	3 cut(s)	6, 84, 400
BlsI	GCNGC	3 cut(s)	7, 85, 401
Bme1390I	CCNGG	2 cut(s)	215, 317
Bme18I	GGWCC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	215, 317
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	249
Bse21I	CCTNAGG	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	215, 317
BseGI	GGATG	2 cut(s)	312, 438
BseMII	CTCAG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	215, 317
BstDEI	CTNAG	4 cut(s)	30, 40, 291, 381
BstF5I	GGATG	2 cut(s)	312, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	215, 317
BstNSI	RCATGY	2 cut(s)	152, 202
BstSCI	CCNGG	2 cut(s)	213, 315
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	312, 438
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	385, 446
CviAII	CATG	4 cut(s)	149, 160, 199, 388
CviJI	RGCY	7 cut(s)	5, 44, 53, 265, 283, 311, 407
CviKI_1	RGCY	7 cut(s)	5, 44, 53, 265, 283, 311, 407
CviQI	GTAC	2 cut(s)	385, 446
DdeI	CTNAG	4 cut(s)	30, 40, 291, 381
DraI	TTTAAA	1 cut(s)	207
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	251
Eco81I	CCTNAGG	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	213, 315
FaeI	CATG	4 cut(s)	152, 163, 202, 391
FaiI	YATR	9 cut(s)	115, 117, 150, 161, 186, 200, 354, 389, 410
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	4 cut(s)	148, 159, 198, 387
Fnu4HI	GCNGC	3 cut(s)	6, 84, 400
FokI	GGATG	2 cut(s)	299, 445
Fsp4HI	GCNGC	3 cut(s)	6, 84, 400
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	3 cut(s)	6, 84, 400
Hin1II	CATG	4 cut(s)	152, 163, 202, 391
HinfI	GANTC	2 cut(s)	75, 327
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	7 cut(s)	55, 124, 335, 385, 413, 423, 436
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	4 cut(s)	30, 40, 291, 381
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	152, 163, 202, 391
KpnI	GGTACC	1 cut(s)	449
LpnPI	CCDG	6 cut(s)	200, 227, 233, 254, 302, 329
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	254, 317, 350
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	2 cut(s)	84, 336
MnlI	CCTC	5 cut(s)	85, 93, 268, 290, 388
MseI	TTAA	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	215, 317
MvaI	CCWGG	2 cut(s)	215, 317
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	4 cut(s)	152, 163, 202, 391
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	2 cut(s)	152, 202
PciI	ACATGT	1 cut(s)	198
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	7, 85, 401
PleI	GAGTC	2 cut(s)	83, 335
PpsI	GAGTC	2 cut(s)	83, 335
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	213, 315
PspGI	CCWGG	2 cut(s)	213, 315
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	217
RsaI	GTAC	2 cut(s)	386, 447
RsaNI	GTAC	2 cut(s)	385, 446
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	3 cut(s)	6, 84, 400
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	84, 336
ScrFI	CCNGG	2 cut(s)	215, 317
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	213, 315
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	438, 459
TasI	AATT	1 cut(s)	359
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	5, 83
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	244, 351, 404
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	2 cut(s)	152, 202
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.