Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

40763655 .. 40765781

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG332600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTGCTGATAGGGGAGAGATTATTCCTAGGGAAAACTTAGCTATTTTGGCTCAATGGAAGGTGGACGATATAGTCCTTGCAGCATTAGAGGGGACGGGGTTCAATTATTTATATGATTTAGCAGTGAAGGTGGGCAGAAATCAGCATGTCAATGGCATGATAGATGCTCTTGTGAAGCATTATGACAAAAATGACATGTGTTTAAAAGTCCAGGACCAACACTTATTCTTTGGATTAGAAGACGTGGTGTTCATTAGTGGGCTTAAGGTGGAGGGGAAGCTATTGACTAAGGGAGGGATAGAAGAAGCCATCCAGGTAAGTAGAGTCCAAGATGAAAAAGGTAATAGATATGTGGAATTTTTGGGTAATGTGCCATCTAAGTACATGAAGGAGGGCGGCAAAGCTATAACTTTTGAAGGGTTGCAAAGGACGTTCGAGAAGGTACCCAGAGATGTCAGTGAGGAAACATTTGCTAGACATGTTAGAGCCTTTGCCCTCTATGTTGCCAACACGACAATCACGGTGACCACCGAGAATAAATATGAGAGTGTGGCCTGCTTGAAGGCCTTTTCTGACATTTACCAAATAAAGAACTTCGCATGGGGAGTTGCAATGCTTTCCCAAGTCCACTATAGTTTGATGAAATATGAGACCAAGAAGGGGGCTAATATTGGAGGTCACATGTACTTCTTGATGGTGTGGGTGTTGGAGCATTTCCCTGCCTTTCGAGATAGTCTAGGGGTTTTGGTTCCTGCACAGTGCAATTTTTCGCTGGCCTGTAGCTGGACATCACCCCTTTCCGAAAAGCTTGCTAACAGGAACCGGCATCAATCCTACAGTCAGCTGTTGGATCAGCATTGCGAGGTTGATTGGAATCCTTATTCTAGGCTGGGAGATACTTTTCTCCCCGAGGGGATTAGCAACCAGCAACGGATGAGAGCGTATCGTGGGGTTCTAGTCAACGCTTTCCACAAGTATTTAGTAAAAAAAAATATTATTAAAGCATATACTTATATAATGCAGATACTCCCCATGCTCTTCATGCAGATACTCCTCATGTCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

356

Amino Acids

40.6

Weight (kDa)

8.42

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	80 - 314	1.5e-17	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	1064
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	3 cut(s)	386, 447, 689
AfiI	CCNNNNNNNGG	2 cut(s)	663, 786
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	3 cut(s)	198, 481, 684
AgsI	TTSAA	3 cut(s)	106, 419, 565
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	213, 315
AluBI	AGCT	6 cut(s)	44, 283, 407, 786, 811, 847
AluI	AGCT	6 cut(s)	44, 283, 407, 786, 811, 847
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	861
Ama87I	CYCGRG	1 cut(s)	911
Aor13HI	TCCGGA	1 cut(s)	1064
AoxI	GGCC	3 cut(s)	555, 567, 777
ApeKI	GCWGC	2 cut(s)	5, 83
ApoI	RAATTY	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	445
AspA2I	CCTAGG	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	538, 786
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	1 cut(s)	217
AvrII	CCTAGG	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	3 cut(s)	320, 385, 691
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	2 cut(s)	215, 317
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	5 cut(s)	30, 477, 740, 888, 959
BfmI	CTRYAG	3 cut(s)	634, 781, 838
BfrI	CTTAAG	1 cut(s)	266
BisI	GCNGC	3 cut(s)	6, 84, 400
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	3 cut(s)	7, 85, 401
Bme1390I	CCNGG	2 cut(s)	215, 317
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	911
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	447, 753, 824
BmrFI	CCNGG	2 cut(s)	215, 317
BmsI	GCATC	2 cut(s)	157, 838
BpiI	GAAGAC	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	29, 912
BsaWI	WCCGGW	1 cut(s)	1064
Bsc4I	CCNNNNNNNGG	2 cut(s)	663, 786
Bse118I	RCCGGY	1 cut(s)	825
Bse3DI	GCAATG	2 cut(s)	621, 859
Bse8I	GATNNNNATC	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	1064
BseBI	CCWGG	2 cut(s)	215, 317
BseDI	CCNNGG	2 cut(s)	29, 912
BseGI	GGATG	2 cut(s)	312, 942
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	2 cut(s)	663, 786
BseMI	GCAATG	2 cut(s)	621, 859
BseRI	GAGGAG	1 cut(s)	1046
BseXI	GCAGC	1 cut(s)	95
BseYI	CCCAGC	1 cut(s)	892
BsgI	GTGCAG	1 cut(s)	741
BshFI	GGCC	3 cut(s)	557, 569, 779
BshNI	GGYRCC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	2 cut(s)	826, 1065
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	663, 786
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	557, 569, 779
Bso31I	GGTCTC	1 cut(s)	647
BsoBI	CYCGRG	1 cut(s)	911
Bsp13I	TCCGGA	1 cut(s)	1064
Bsp143I	GATC	1 cut(s)	853
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	3 cut(s)	557, 569, 779
BspEI	TCCGGA	1 cut(s)	1064
BspLI	GGNNCC	3 cut(s)	447, 753, 824
BspPI	GGATC	1 cut(s)	861
BspQI	GCTCTTC	1 cut(s)	1046
BspT107I	GGYRCC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	621, 859
BsrFI	RCCGGY	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	825
BssECI	CCNNGG	2 cut(s)	29, 912
BssMI	GATC	1 cut(s)	853
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	215, 317
Bst4CI	ACNGT	3 cut(s)	526, 762, 842
Bst6I	CTCTTC	1 cut(s)	1046
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	559, 777, 813
BstDEI	CTNAG	3 cut(s)	40, 291, 381
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	312, 942
BstKTI	GATC	1 cut(s)	856
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	1 cut(s)	853
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 1045
BstNI	CCWGG	2 cut(s)	215, 317
BstNSI	RCATGY	4 cut(s)	152, 202, 485, 688
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	213, 315
BstSFI	CTRYAG	3 cut(s)	634, 781, 838
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	557, 569, 779
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	312, 942
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 466, 767
Cac8I	GCNNGC	3 cut(s)	559, 777, 813
Cfr10I	RCCGGY	1 cut(s)	825
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	385, 446, 688
CviQI	GTAC	3 cut(s)	385, 446, 688
DdeI	CTNAG	3 cut(s)	40, 291, 381
DpnI	GATC	1 cut(s)	855
DpnII	GATC	1 cut(s)	853
DraI	TTTAAA	1 cut(s)	207
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	1046
EarI	CTCTTC	1 cut(s)	1046
Eco130I	CCWWGG	1 cut(s)	29
Eco147I	AGGCCT	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	911
Eco91I	GGTNACC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	526
EcoRII	CCWGG	2 cut(s)	213, 315
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	6, 84, 400
FokI	GGATG	2 cut(s)	299, 949
Fsp4HI	GCNGC	3 cut(s)	6, 84, 400
FspBI	CTAG	5 cut(s)	30, 477, 740, 888, 959
GluI	GCNGC	3 cut(s)	6, 84, 400
GsaI	CCCAGC	1 cut(s)	896
HaeIII	GGCC	3 cut(s)	557, 569, 779
HapII	CCGG	2 cut(s)	826, 1065
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	2 cut(s)	327, 877
HpaII	CCGG	2 cut(s)	826, 1065
HphI	GGTGA	2 cut(s)	538, 786
Hpy166II	GTNNAC	3 cut(s)	67, 631, 964
Hpy188I	TCNGA	2 cut(s)	577, 805
Hpy188III	TCNNGA	4 cut(s)	439, 694, 731, 1065
Hpy8I	GTNNAC	3 cut(s)	67, 631, 964
HpyAV	CCTTC	7 cut(s)	55, 124, 385, 413, 436, 559, 655
HpyCH4III	ACNGT	3 cut(s)	526, 762, 842
HpyCH4IV	ACGT	2 cut(s)	246, 434
HpyCH4V	TGCA	7 cut(s)	83, 427, 614, 758, 765, 1024, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 1045
HpyF3I	CTNAG	3 cut(s)	40, 291, 381
HpySE526I	ACGT	2 cut(s)	246, 434
Kpn2I	TCCGGA	1 cut(s)	1064
KpnI	GGTACC	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	853
LguI	GCTCTTC	1 cut(s)	1046
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	2 cut(s)	157, 838
MaeI	CTAG	5 cut(s)	30, 477, 740, 888, 959
MaeII	ACGT	2 cut(s)	246, 434
MaeIII	GTNAC	2 cut(s)	526, 680
MalI	GATC	1 cut(s)	855
MboI	GATC	1 cut(s)	853
MboII	GAAGA	3 cut(s)	254, 317, 1033
MluCI	AATT	3 cut(s)	106, 359, 766
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	690, 831
MroI	TCCGGA	1 cut(s)	1064
MseI	TTAA	3 cut(s)	206, 267, 1002
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	847
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	2 cut(s)	826, 1065
MspR9I	CCNGG	2 cut(s)	215, 317
MvaI	CCWGG	2 cut(s)	215, 317
MwoI	GCNNNNNNNGC	2 cut(s)	50, 1045
NdeII	GATC	1 cut(s)	853
NlaIV	GGNNCC	3 cut(s)	447, 753, 824
NmuCI	GTSAC	2 cut(s)	526, 680
NspI	RCATGY	4 cut(s)	152, 202, 485, 688
PceI	AGGCCT	1 cut(s)	569
PciI	ACATGT	3 cut(s)	198, 481, 684
PciSI	GCTCTTC	1 cut(s)	1046
PfeI	GAWTC	1 cut(s)	877
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	7, 85, 401
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PscI	ACATGT	3 cut(s)	198, 481, 684
Psp6I	CCWGG	2 cut(s)	213, 315
PspEI	GGTNACC	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	2 cut(s)	213, 315
PspN4I	GGNNCC	3 cut(s)	447, 753, 824
PspPI	GGNCC	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	386, 447, 689
RsaNI	GTAC	3 cut(s)	385, 446, 688
RseI	CAYNNNNRTG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	1046
SaqAI	TTAA	3 cut(s)	206, 267, 1002
SatI	GCNGC	3 cut(s)	6, 84, 400
Sau3AI	GATC	1 cut(s)	853
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	215, 317
SfaNI	GCATC	2 cut(s)	157, 838
SfcI	CTRYAG	3 cut(s)	634, 781, 838
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	106, 359, 766
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	1 cut(s)	399
SspI	AATATT	2 cut(s)	673, 997
SspMI	CTAG	5 cut(s)	30, 477, 740, 888, 959
StuI	AGGCCT	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	213, 315
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	526, 762, 842
TaiI	ACGT	2 cut(s)	249, 437
TaqI	TCGA	2 cut(s)	438, 730
TasI	AATT	3 cut(s)	106, 359, 766
TatI	WGTACW	2 cut(s)	384, 687
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	877
Tru1I	TTAA	3 cut(s)	206, 267, 1002
Tru9I	TTAA	3 cut(s)	206, 267, 1002
TscAI	CASTG	3 cut(s)	132, 466, 767
TseFI	GTSAC	2 cut(s)	526, 680
TseI	GCWGC	2 cut(s)	5, 83
Tsp45I	GTSAC	2 cut(s)	526, 680
TspDTI	ATGAA	5 cut(s)	244, 351, 404, 659, 1033
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	3 cut(s)	132, 466, 767
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	4 cut(s)	152, 202, 485, 688
XmaJI	CCTAGG	1 cut(s)	29
XspI	CTAG	5 cut(s)	30, 477, 740, 888, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.