Prupe.8G014000_v2.0.a1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001459
Physical Location & Seq
Reverse (-)
1144685 .. 1146075
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G014000.1

Sequence Viewer

Length: 1176 bp
ATGGATATTGAGCAGGCACTTGATGGCATAAATAATTTGAAGGAATGGAAGATTGACAAAAGAGTTAAACAGAGAATTAAAGACTCCGGCTTTGATGGGTTACTGAGGCTCACTACTTTTCCAGTGAACCATGATTTACCCCTATTATCTGCACTTGTAGAATCCTATGAAATAAAAAGTAGATGTTTCGTTTTTAATGGTCATAAACTTGTTTTTGGTTTAGAAGATGTATTGTATATAACAGGGTTGCCAGTAGATGGTAATCCTGTGACGGGTATTGATTCAAAAGGGAATGAGCTTTGTATGAAATACTTAGGCCGTAATGTTTGCGATAAAACGAGAACTGGTTTCACTAATTCAGCATGGCTTAGGAAGAATTTTGAGGTAGTTCCTGAGACTATTGATCAAGATAGTCCTGAGATTGAACCTTATGTTCGAGCTTTTCTGCTGTATCTTATAGGCTCCATAGTTGTTCCGAGTTATTACGGAAGTAATGTTCCTGTTATGTATCTTTCTCTTATGGAAAATCTTCAAAGCATAAAGGATTATGCATGGGGTGCTGCTTTATTAGCTCATCTTCATCTTTCCATGGAGAATTTTAAGCAATCTTATTCACCACGCCGAAGAAACATATTGATCGGACACAGCTATTCTCTTATGGTTTTTGCAATGGAGCGTATTCCTAAGCTGCTGCTGAGATTTTGTTTGAATGGAGCTAATCCGGTGGATGATTATCTTCCAACAACGTTTCCTTTGTTGGCAGGATGGACAAAACTCCTGTGCGAGCACTCCAATACTGAAGAAAAAATTACTAAACAAGAATATCTTGAAATTCTGGATGGGTTAAAGGAGGATGATGTTAGTTATTGTGCCGGGCAGGAGAAAATTGGCATGTCGCGGACAATCCTCCTTTGCTATGAGAAGGCTGTGTATCATCGTCCTGATTTAAGTCCAAAGCAATTTGGCATTCAGGAAGTGAACACCAATATATTGCGCCCCCTCGTTGAGTTGGAATTGGGTTCTCGGTTTGGTCGGAAAGGAATAAATTGGGGAACATATGGGAAGTATGGATGTTACAAGGAGGAGTGGGAAAGTAGGGCCAGCTGCCTCATAATAGAATCTGCTGAAGAGGATCCTGGCCCCCCCTCGTTTGAAGGTAATTATCTACTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

392

Amino Acids

44.51

Weight (kDa)

5.55

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AccII CGCG 1 cut(s) 898
AciI CCGC 1 cut(s) 898
AclI AACGTT 1 cut(s) 746
AclWI GGATC 2 cut(s) 1127, 1140
AcsI RAATTY 3 cut(s) 376, 595, 831
AcuI CTGAAG 2 cut(s) 819, 1146
AfiI CCNNNNNNNGG 2 cut(s) 257, 272
AgsI TTSAA 7 cut(s) 40, 285, 425, 533, 709, 830, 1154
AjnI CCWGG 1 cut(s) 1135
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 7 cut(s) 298, 440, 572, 648, 688, 716, 1104
AluI AGCT 7 cut(s) 298, 440, 572, 648, 688, 716, 1104
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 1127, 1140
AoxI GGCC 3 cut(s) 316, 1098, 1138
ApeKI GCWGC 4 cut(s) 560, 688, 691, 1104
ApoI RAATTY 3 cut(s) 376, 595, 831
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 996
AspS9I GGNCC 2 cut(s) 1098, 1139
AsuC2I CCSGG 1 cut(s) 874
AsuHPI GGTGA 1 cut(s) 606
BamHI GGATCC 1 cut(s) 1132
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 4 cut(s) 547, 675, 678, 1091
BccI CCATC 5 cut(s) 17, 89, 251, 759, 833
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 1137
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 389
BisI GCNGC 4 cut(s) 561, 689, 692, 1105
BlsI GCNGC 4 cut(s) 562, 690, 693, 1106
Bme1390I CCNGG 2 cut(s) 874, 1137
BmgT120I GGNCC 2 cut(s) 1098, 1139
BmiI GGNNCC 3 cut(s) 463, 1134, 1141
BmrFI CCNGG 2 cut(s) 874, 1137
Bpu10I CCTNAGC 2 cut(s) 368, 684
BpuMI CCSGG 1 cut(s) 874
BsaBI GATNNNNATC 2 cut(s) 261, 732
BsaJI CCNNGG 1 cut(s) 588
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 272
Bse1I ACTGG 3 cut(s) 122, 251, 349
Bse3DI GCAATG 1 cut(s) 675
Bse8I GATNNNNATC 2 cut(s) 261, 732
BseBI CCWGG 1 cut(s) 1137
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 5 cut(s) 733, 770, 844, 859, 1076
BseJI GATNNNNATC 2 cut(s) 261, 732
BseLI CCNNNNNNNGG 2 cut(s) 257, 272
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 5 cut(s) 95, 384, 408, 686, 1160
BseNI ACTGG 3 cut(s) 122, 251, 349
BseRI GAGGAG 1 cut(s) 1097
BseXI GCAGC 4 cut(s) 547, 675, 678, 1091
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 3 cut(s) 318, 1100, 1140
BsiHKAI GWGCWC 1 cut(s) 789
BsiSI CCGG 3 cut(s) 87, 722, 873
BslI CCNNNNNNNGG 2 cut(s) 257, 272
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 966
BsnI GGCC 3 cut(s) 318, 1100, 1140
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 3 cut(s) 403, 636, 1132
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 1 cut(s) 898
BspANI GGCC 3 cut(s) 318, 1100, 1140
BspCNI CTCAG 5 cut(s) 96, 385, 409, 687, 1161
BspFNI CGCG 1 cut(s) 898
BspLI GGNNCC 3 cut(s) 463, 1134, 1141
BspPI GGATC 2 cut(s) 1127, 1140
BsrDI GCAATG 1 cut(s) 675
BsrI ACTGG 3 cut(s) 122, 251, 349
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 3 cut(s) 403, 636, 1132
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 1137
Bst6I CTCTTC 1 cut(s) 1122
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 15, 785, 1102
BstDEI CTNAG 8 cut(s) 104, 313, 368, 393, 417, 684, 695, 1169
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 5 cut(s) 733, 770, 844, 859, 1076
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 1 cut(s) 996
BstKTI GATC 3 cut(s) 406, 639, 1135
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 3 cut(s) 403, 636, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 557, 569
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 2 cut(s) 872, 1135
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 4 cut(s) 547, 675, 678, 1091
BstX2I RGATCY 1 cut(s) 1132
BstYI RGATCY 1 cut(s) 1132
BsuRI GGCC 3 cut(s) 318, 1100, 1140
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 5 cut(s) 733, 770, 844, 859, 1076
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 15, 785, 1102
CfoI GCGC 1 cut(s) 996
Cfr13I GGNCC 2 cut(s) 1098, 1139
CviAII CATG 5 cut(s) 131, 363, 552, 589, 892
DdeI CTNAG 8 cut(s) 104, 313, 368, 393, 417, 684, 695, 1169
DpnI GATC 3 cut(s) 405, 638, 1134
DpnII GATC 3 cut(s) 403, 636, 1132
Eam1104I CTCTTC 1 cut(s) 1122
EarI CTCTTC 1 cut(s) 1122
Eco130I CCWWGG 1 cut(s) 588
Eco57I CTGAAG 2 cut(s) 819, 1146
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 588
EcoT22I ATGCAT 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 5 cut(s) 134, 366, 555, 592, 895
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FatI CATG 5 cut(s) 130, 362, 551, 588, 891
FauNDI CATATG 1 cut(s) 1057
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 561, 689, 692, 1105
FokI GGATG 5 cut(s) 740, 777, 851, 866, 1083
Fsp4HI GCNGC 4 cut(s) 561, 689, 692, 1105
GlaI GCGC 1 cut(s) 995
GluI GCNGC 4 cut(s) 561, 689, 692, 1105
HaeIII GGCC 3 cut(s) 318, 1100, 1140
HapII CCGG 3 cut(s) 87, 722, 873
HhaI GCGC 1 cut(s) 996
Hin1II CATG 5 cut(s) 134, 366, 555, 592, 895
Hin6I GCGC 1 cut(s) 994
HinP1I GCGC 1 cut(s) 994
HinfI GANTC 4 cut(s) 83, 161, 281, 1118
HpaII CCGG 3 cut(s) 87, 722, 873
HphI GGTGA 1 cut(s) 606
Hpy166II GTNNAC 2 cut(s) 127, 979
Hpy188I TCNGA 3 cut(s) 477, 641, 1035
Hpy188III TCNNGA 7 cut(s) 392, 407, 416, 827, 836, 941, 971
Hpy8I GTNNAC 2 cut(s) 127, 979
HpyAV CCTTC 3 cut(s) 34, 916, 1148
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 3 cut(s) 152, 551, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 569
HpyF3I CTNAG 8 cut(s) 104, 313, 368, 393, 417, 684, 695, 1169
HpySE526I ACGT 1 cut(s) 746
Hsp92II CATG 5 cut(s) 134, 366, 555, 592, 895
HspAI GCGC 1 cut(s) 994
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 403, 636, 1132
LmnI GCTCC 3 cut(s) 467, 673, 713
Lsp1109I GCAGC 4 cut(s) 547, 675, 678, 1091
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 3 cut(s) 99, 268, 1073
MalI GATC 3 cut(s) 405, 638, 1134
MboI GATC 3 cut(s) 403, 636, 1132
MboII GAAGA 9 cut(s) 61, 236, 385, 521, 569, 636, 728, 812, 1139
MflI RGATCY 1 cut(s) 1132
MhlI GDGCHC 1 cut(s) 789
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 3 cut(s) 764, 990, 1013
MnlI CCTC 9 cut(s) 99, 376, 844, 917, 1010, 1075, 1118, 1123, 1156
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 6 cut(s) 66, 78, 195, 600, 845, 947
MspA1I CMGCKG 1 cut(s) 1104
MspI CCGG 3 cut(s) 87, 722, 873
MspR9I CCNGG 2 cut(s) 874, 1137
Mva1269I GAATGC 1 cut(s) 966
MvaI CCWGG 1 cut(s) 1137
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 2 cut(s) 557, 569
NciI CCSGG 1 cut(s) 874
NcoI CCATGG 1 cut(s) 588
NdeI CATATG 1 cut(s) 1057
NdeII GATC 3 cut(s) 403, 636, 1132
NlaIII CATG 5 cut(s) 134, 366, 555, 592, 895
NlaIV GGNNCC 3 cut(s) 463, 1134, 1141
NmuCI GTSAC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 1 cut(s) 895
PctI GAATGC 1 cut(s) 966
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 161, 281, 1118
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 4 cut(s) 562, 690, 693, 1106
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp1406I AACGTT 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 1135
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 3 cut(s) 463, 1134, 1141
PspPI GGNCC 2 cut(s) 1098, 1139
PsuI RGATCY 1 cut(s) 1132
PvuII CAGCTG 1 cut(s) 1104
SaqAI TTAA 6 cut(s) 66, 78, 195, 600, 845, 947
SatI GCNGC 4 cut(s) 561, 689, 692, 1105
Sau3AI GATC 3 cut(s) 403, 636, 1132
Sau96I GGNCC 2 cut(s) 1098, 1139
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 874, 1137
SduI GDGCHC 1 cut(s) 789
SsiI CCGC 1 cut(s) 898
StyD4I CCNGG 2 cut(s) 872, 1135
StyI CCWWGG 1 cut(s) 588
TaiI ACGT 1 cut(s) 749
TaqI TCGA 1 cut(s) 436
TfiI GAWTC 3 cut(s) 161, 281, 1118
Tru1I TTAA 6 cut(s) 66, 78, 195, 600, 845, 947
Tru9I TTAA 6 cut(s) 66, 78, 195, 600, 845, 947
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 4 cut(s) 560, 688, 691, 1104
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 183, 320, 569
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 257
XapI RAATTY 3 cut(s) 376, 595, 831
XceI RCATGY 1 cut(s) 895
XmnI GAANNNNTTC 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.