Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

42407692 .. 42416149

Gene Structure 8458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACTGTGAGTAGGGAAAAGTTAACTAAGTTGTCTCAATGGAACGTGGACCAAAGGGTCCTTGAGGCATTAAAGGGGACGGGGTTTGATCATTTATATAGATTAGCACAAAATTTGGGTAGACGTCACCATGACAACCACATGTTAGGTGCTCTTGTCAAGTATTATCATGTTGGCGACATGTGTTTTAAAGTCAACAATCGGAATTTATTTTTTGGTTTAGAAGATGTGCTTTATATCTCTGGGCTTCAGGTAGAAGGGAGACTAGTGATAAAGGAAGAGGAGGAGGTCAATGAAAACCTTTCAGTAGTAGGGTTAGGAGGAGTGCCTTCAATCCACCTGAAGAACAATGCTGTTCGACTTGATTGGTTAAGAGACACGTTTGAGACTGTACCCGAAGTTGTAGATGATGATACATTTGACCGTCATGTTAGAGCATTTTCCCTCTATGTTTTAGGCACTACCATTCTCAGTAATAAGGATCATAGGTTCGTGAATTTGTGCTACTTGAAGTGCTTGTCCGTGATAGGGGAAATTAAGGAGTATGCATGGGGAGTTGCAATGCTCTCCCACGTGCACCATTGTTTACGGCATCATTGCAACACGAGGACGAGTGCAATTGGCGGCCACTTGTTCTTCCTCATGGTGGAACTCTTCAAGCCCGATGACCCTGTTTATCCTAGCGAGTTCCCGCTATCTTGTAGTTGGGGATTATTGCTTCCCAGTGTTACTTGGCAGCCTTATACGAGGCTTAGCGAGAACTTTCTCCCTGAAGAGATTAGGAGTCAGCGACGGATGGGGAGGTTCCGGGGCATTTTGATTCACCCGTTTCACATGCAGCCCCTCATATTCCATCGTCCCGATCTTTGCCCAAGTAAACTTGGGTTTAGAGAGGCTGATGTGACCCATTGTCTCCCCATGCTTGAAGATCGCAAAAGATTCCCAAATTGGCAGCATCATGATGACGTCAGCCGGGTCCGGTTGTTGGGCTTCAGGCTGCTGGGCCTTAGGCAGCGGCTTGGGCTCAGCTTGGGCTTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTGTCGGTTCGGTTTCAACCTTTTCTGGTGGCCGGTTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

376

Amino Acids

43.79

Weight (kDa)

8.59

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1985	PF09331	60 - 186	5.5e-06	Domain of unknown function (DUF1985)
PMD	PF10536	70 - 216	4.7e-15	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	2 cut(s)	127, 969
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	3 cut(s)	624, 692, 1015
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	2 cut(s)	625, 1117
AcsI	RAATTY	3 cut(s)	112, 205, 496
AcuI	CTGAAG	4 cut(s)	233, 362, 792, 976
AcvI	CACGTG	1 cut(s)	574
AcyI	GRCGYC	2 cut(s)	124, 966
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	3 cut(s)	528, 646, 985
AflIII	ACRYGT	3 cut(s)	141, 180, 378
AgsI	TTSAA	5 cut(s)	333, 511, 658, 926, 1104
AhdI	GACNNNNNGTC	1 cut(s)	909
AhlI	ACTAGT	1 cut(s)	265
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
AluBI	AGCT	1 cut(s)	1029
AluI	AGCT	1 cut(s)	1029
Alw21I	GWGCWC	2 cut(s)	154, 579
Alw26I	GTCTC	5 cut(s)	39, 256, 369, 380, 917
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	3 cut(s)	625, 1003, 1117
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	5 cut(s)	736, 838, 952, 997, 1012
ApoI	RAATTY	3 cut(s)	112, 205, 496
AspS9I	GGNCC	4 cut(s)	49, 58, 976, 1003
AsuC2I	CCSGG	2 cut(s)	809, 974
AsuHPI	GGTGA	2 cut(s)	119, 815
AvaII	GGWCC	3 cut(s)	49, 58, 976
AxyI	CCTNAGG	1 cut(s)	1007
BaeGI	GKGCMC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	1026
BauI	CACGAG	1 cut(s)	604
BbrPI	CACGTG	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	154, 579
BbvI	GCAGC	5 cut(s)	748, 850, 964, 984, 1024
BccI	CCATC	2 cut(s)	790, 861
BceAI	ACGGC	1 cut(s)	605
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	809, 974
BcoDI	GTCTC	5 cut(s)	39, 256, 369, 380, 917
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	266, 681
BisI	GCNGC	7 cut(s)	625, 737, 839, 953, 998, 1013, 1016
BlpI	GCTNAGC	2 cut(s)	752, 1025
BlsI	GCNGC	7 cut(s)	626, 738, 840, 954, 999, 1014, 1017
Bme1390I	CCNGG	2 cut(s)	809, 974
Bme18I	GGWCC	3 cut(s)	49, 58, 976
BmeRI	GACNNNNNGTC	1 cut(s)	909
BmgT120I	GGNCC	4 cut(s)	49, 58, 976, 1003
BmiI	GGNNCC	3 cut(s)	59, 806, 977
BmrFI	CCNGG	2 cut(s)	809, 974
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	2 cut(s)	601, 964
BmuI	ACTGGG	1 cut(s)	717
Bpu1102I	GCTNAGC	2 cut(s)	752, 1025
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	809, 974
BsaAI	YACGTR	1 cut(s)	574
BsaHI	GRCGYC	2 cut(s)	124, 966
BsaJI	CCNNGG	1 cut(s)	808
BsaWI	WCCGGW	1 cut(s)	978
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 646, 985
Bse118I	RCCGGY	1 cut(s)	1119
Bse1I	ACTGG	1 cut(s)	723
Bse21I	CCTNAGG	1 cut(s)	1007
Bse3DI	GCAATG	2 cut(s)	567, 595
BseDI	CCNNGG	1 cut(s)	808
BseGI	GGATG	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	528, 646, 985
BseMI	GCAATG	2 cut(s)	567, 595
BseMII	CTCAG	2 cut(s)	484, 1039
BseNI	ACTGG	1 cut(s)	723
BseRI	GAGGAG	3 cut(s)	296, 299, 336
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	5 cut(s)	748, 850, 964, 984, 1024
BseYI	CCCAGC	1 cut(s)	1000
BshFI	GGCC	3 cut(s)	627, 1005, 1119
BsiHKAI	GWGCWC	2 cut(s)	154, 579
BsiSI	CCGG	4 cut(s)	808, 973, 979, 1120
BslFI	GGGAC	2 cut(s)	91, 843
BslI	CCNNNNNNNGG	3 cut(s)	528, 646, 985
BsmAI	GTCTC	5 cut(s)	39, 256, 369, 380, 917
BsmFI	GGGAC	2 cut(s)	91, 843
BsnI	GGCC	3 cut(s)	627, 1005, 1119
Bsp1286I	GDGCHC	3 cut(s)	154, 579, 1026
Bsp143I	GATC	4 cut(s)	88, 481, 862, 928
Bsp1720I	GCTNAGC	2 cut(s)	752, 1025
BspACI	CCGC	3 cut(s)	624, 692, 1015
BspANI	GGCC	3 cut(s)	627, 1005, 1119
BspCNI	CTCAG	2 cut(s)	483, 1038
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	59, 806, 977
BspPI	GGATC	1 cut(s)	489
BsrDI	GCAATG	2 cut(s)	567, 595
BsrFI	RCCGGY	1 cut(s)	1119
BsrI	ACTGG	1 cut(s)	723
BssAI	RCCGGY	1 cut(s)	1119
BssECI	CCNNGG	1 cut(s)	808
BssMI	GATC	4 cut(s)	88, 481, 862, 928
BssNI	GRCGYC	2 cut(s)	124, 966
BssSI	CACGAG	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	604
Bst4CI	ACNGT	3 cut(s)	7, 391, 425
Bst6I	CTCTTC	3 cut(s)	273, 659, 768
BstACI	GRCGYC	2 cut(s)	124, 966
BstBAI	YACGTR	1 cut(s)	574
BstDEI	CTNAG	5 cut(s)	27, 470, 752, 1007, 1025
BstF5I	GGATG	1 cut(s)	801
BstKTI	GATC	4 cut(s)	91, 484, 865, 931
BstMAI	GTCTC	5 cut(s)	39, 256, 369, 380, 917
BstMBI	GATC	4 cut(s)	88, 481, 862, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	1021
BstNSI	RCATGY	3 cut(s)	145, 184, 838
BstSCI	CCNGG	2 cut(s)	807, 972
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	748, 850, 964, 984, 1024
Bsu36I	CCTNAGG	1 cut(s)	1007
BsuRI	GGCC	3 cut(s)	627, 1005, 1119
BtsCI	GGATG	1 cut(s)	801
BtsIMutI	CAGTG	1 cut(s)	730
CciI	TCATGA	1 cut(s)	958
Cfr10I	RCCGGY	1 cut(s)	1119
Cfr13I	GGNCC	4 cut(s)	49, 58, 976, 1003
Csp6I	GTAC	1 cut(s)	392
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	5 cut(s)	27, 470, 752, 1007, 1025
DpnI	GATC	4 cut(s)	90, 483, 864, 930
DpnII	GATC	4 cut(s)	88, 481, 862, 928
DraI	TTTAAA	1 cut(s)	190
DrdI	GACNNNNNNGTC	1 cut(s)	56
DriI	GACNNNNNGTC	1 cut(s)	909
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	2 cut(s)	625, 1117
Eam1104I	CTCTTC	3 cut(s)	273, 659, 768
Eam1105I	GACNNNNNGTC	1 cut(s)	909
EarI	CTCTTC	3 cut(s)	273, 659, 768
Eco24I	GRGCYC	1 cut(s)	1026
Eco47I	GGWCC	3 cut(s)	49, 58, 976
Eco57I	CTGAAG	4 cut(s)	233, 362, 792, 976
Eco72I	CACGTG	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	1007
EcoO109I	RGGNCCY	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	1026
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	91, 843
FauI	CCCGC	1 cut(s)	699
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	7 cut(s)	625, 737, 839, 953, 998, 1013, 1016
FokI	GGATG	1 cut(s)	808
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	7 cut(s)	625, 737, 839, 953, 998, 1013, 1016
FspBI	CTAG	2 cut(s)	266, 681
GluI	GCNGC	7 cut(s)	625, 737, 839, 953, 998, 1013, 1016
GsaI	CCCAGC	1 cut(s)	1004
HaeIII	GGCC	3 cut(s)	627, 1005, 1119
HapII	CCGG	4 cut(s)	808, 973, 979, 1120
Hin1I	GRCGYC	2 cut(s)	124, 966
HincII	GTYRAC	2 cut(s)	24, 196
HindII	GTYRAC	2 cut(s)	24, 196
HinfI	GANTC	3 cut(s)	784, 820, 939
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	4 cut(s)	808, 973, 979, 1120
HphI	GGTGA	2 cut(s)	119, 815
Hpy166II	GTNNAC	7 cut(s)	24, 49, 122, 196, 577, 587, 878
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	493, 860, 959
Hpy8I	GTNNAC	7 cut(s)	24, 49, 122, 196, 577, 587, 878
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	2 cut(s)	251, 339
HpyCH4III	ACNGT	3 cut(s)	7, 391, 425
HpyCH4IV	ACGT	5 cut(s)	45, 124, 380, 573, 966
HpyCH4V	TGCA	6 cut(s)	548, 560, 577, 600, 617, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1021
HpyF3I	CTNAG	5 cut(s)	27, 470, 752, 1007, 1025
HpySE526I	ACGT	5 cut(s)	45, 124, 380, 573, 966
Hsp92I	GRCGYC	2 cut(s)	124, 966
Ksp22I	TGATCA	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	88, 481, 862, 928
Lsp1109I	GCAGC	5 cut(s)	748, 850, 964, 984, 1024
LweI	GCATC	2 cut(s)	601, 964
MaeI	CTAG	2 cut(s)	266, 681
MaeII	ACGT	5 cut(s)	45, 124, 380, 573, 966
MaeIII	GTNAC	3 cut(s)	125, 727, 901
MalI	GATC	4 cut(s)	90, 483, 864, 930
MboI	GATC	4 cut(s)	88, 481, 862, 928
MboII	GAAGA	7 cut(s)	236, 290, 355, 628, 646, 785, 938
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	3 cut(s)	154, 579, 1026
MluCI	AATT	6 cut(s)	112, 205, 496, 534, 618, 946
MlyI	GAGTC	1 cut(s)	793
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	5 cut(s)	23, 71, 189, 371, 537
MslI	CAYNNNNRTG	1 cut(s)	960
MspA1I	CMGCKG	1 cut(s)	1015
MspI	CCGG	4 cut(s)	808, 973, 979, 1120
MspR9I	CCNGG	2 cut(s)	809, 974
MunI	CAATTG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	1021
NciI	CCSGG	2 cut(s)	809, 974
NdeII	GATC	4 cut(s)	88, 481, 862, 928
NlaIV	GGNNCC	3 cut(s)	59, 806, 977
NmuCI	GTSAC	2 cut(s)	125, 901
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	3 cut(s)	145, 184, 838
PagI	TCATGA	1 cut(s)	958
PciI	ACATGT	2 cut(s)	141, 180
PfeI	GAWTC	2 cut(s)	820, 939
PkrI	GCNGC	7 cut(s)	626, 738, 840, 954, 999, 1014, 1017
PleI	GAGTC	1 cut(s)	792
PmaCI	CACGTG	1 cut(s)	574
PmlI	CACGTG	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	792
Ppu21I	YACGTR	1 cut(s)	574
PpuMI	RGGWCCY	1 cut(s)	58
PscI	ACATGT	2 cut(s)	141, 180
Psp5II	RGGWCCY	1 cut(s)	58
PspCI	CACGTG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	1000
PspN4I	GGNNCC	3 cut(s)	59, 806, 977
PspPI	GGNCC	4 cut(s)	49, 58, 976, 1003
PspPPI	RGGWCCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	960
SaqAI	TTAA	5 cut(s)	23, 71, 189, 371, 537
SatI	GCNGC	7 cut(s)	625, 737, 839, 953, 998, 1013, 1016
Sau3AI	GATC	4 cut(s)	88, 481, 862, 928
Sau96I	GGNCC	4 cut(s)	49, 58, 976, 1003
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	2 cut(s)	809, 974
SduI	GDGCHC	3 cut(s)	154, 579, 1026
SfaNI	GCATC	2 cut(s)	601, 964
SinI	GGWCC	3 cut(s)	49, 58, 976
SmiMI	CAYNNNNRTG	1 cut(s)	960
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	6 cut(s)	112, 205, 496, 534, 618, 946
SsiI	CCGC	3 cut(s)	624, 692, 1015
SspMI	CTAG	2 cut(s)	266, 681
StyD4I	CCNGG	2 cut(s)	807, 972
TaaI	ACNGT	3 cut(s)	7, 391, 425
TaiI	ACGT	5 cut(s)	48, 127, 383, 576, 969
TaqI	TCGA	1 cut(s)	358
TasI	AATT	6 cut(s)	112, 205, 496, 534, 618, 946
TauI	GCSGC	2 cut(s)	627, 1018
TfiI	GAWTC	2 cut(s)	820, 939
Tru1I	TTAA	5 cut(s)	23, 71, 189, 371, 537
Tru9I	TTAA	5 cut(s)	23, 71, 189, 371, 537
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	2 cut(s)	125, 901
TseI	GCWGC	5 cut(s)	736, 838, 952, 997, 1012
Tsp45I	GTSAC	2 cut(s)	125, 901
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	2 cut(s)	511, 808
TspRI	CASTG	1 cut(s)	730
VneI	GTGCAC	1 cut(s)	575
VpaK11BI	GGWCC	3 cut(s)	49, 58, 976
XapI	RAATTY	3 cut(s)	112, 205, 496
XceI	RCATGY	3 cut(s)	145, 184, 838
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	2 cut(s)	266, 681
ZraI	GACGTC	2 cut(s)	125, 967
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.