Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

27635065 .. 27637968

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTTATATGCGTTGCAAGAGCACTATAACGAAAAAGACAGGGTTCTCAAAATCAACAATAAGATCTTATTTTTCGGACTAGAAGATGTCCTTCTAATATGTGGTCTTCCGGTTATGGGAAAACTTGTCATAGAAGACTCAAATTCTCAATCAGTGGATGATCTTCTAGGCCCATTGCCCAATGAGGTTGTACGAATCAATTCTATTAAACTCAGTTGGCTGAAAAAGACTTTTGAAAAGGTTCCTAGGGATGTGATTGCGCAAGGAACCGAAAGTCTTGAGTTTGCTAAATATGTTAGAGGATTTGCCCTCTTCATATTAGGCACAACCATTTTTTCTACTGCAGAAGGTAGACATGTAAGTCTGGGATTCTTGGAGTTTTTGCGCAACATAGGTGATATAAAGAATCTTGAATGGGGTGTCGCAATGCTCTCACAGTTGCATCTAAGTTTGGGACGTGGTGGACCAAATATTAATGGCCACGCTTTCTTCCTCATGATTTGGGCATTGGAGCACATTCCAGGATTTGCAAGCATCTTTTTCAGTAATAAAACGAAAGTTGAGAAACCAAGCGAGTTCCCATTGTCTCAGAGCTGGGGACGAAAGATGCTAGCAGAACTTGCCAATAGACATCAAAGAAAGAGAAAAGATTATGATGAAATTGATTGGCAACCTTATAAAAGGTTAAAGGATAACTTTCTCCCCAAAGATCTTGTTAGCCATAGACAAATGGGAGCGTGCAGAATAATTTTGATTCAGCCTTATTCTAACAAAGTCATCTATCATCGGCCTGACTTGTGCCCAATGAAGCTTGGTTTTGAAGAGGCTGATCTAAGCGCTTGTGAACCATTGGGGCTCAAAATGGCAAGAATCACCAAGCAAGATCTGAATAATGAGTGGTGCAAGCTGCTCAAATCTTTTGTGAAAAAGAAACATGACTCAAGTGCAGGTGAATCGATTGCTTCAAACACAACCCTTAAACTCTTAGCACACCGAAAGACTATTAAAAACTTATTAATAATAAGACTCTTCAATACTTATAAAATTTCAAGGCCGGTTACAAGCTTTTCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

358

Amino Acids

41.03

Weight (kDa)

9.46

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	27 - 275	6.3e-20	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	678, 1041
AarI	CACCTGC	1 cut(s)	938
AasI	GACNNNNNNGTC	1 cut(s)	360
Acc16I	TGCGCA	2 cut(s)	261, 386
Acc36I	ACCTGC	1 cut(s)	938
AccI	GTMKAC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	142, 1044
AfaI	GTAC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	838
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	6 cut(s)	236, 413, 821, 966, 1033, 1050
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	4 cut(s)	594, 811, 907, 1065
AluI	AGCT	4 cut(s)	594, 811, 907, 1065
Alw21I	GWGCWC	2 cut(s)	24, 516
Alw26I	GTCTC	1 cut(s)	591
Aor51HI	AGCGCT	1 cut(s)	838
AoxI	GGCC	4 cut(s)	169, 478, 788, 1052
ApeKI	GCWGC	1 cut(s)	907
ApoI	RAATTY	2 cut(s)	142, 1044
AseI	ATTAAT	2 cut(s)	474, 1016
Asp700I	GAANNNNTTC	2 cut(s)	199, 240
AspA2I	CCTAGG	1 cut(s)	245
AspLEI	GCGC	3 cut(s)	262, 387, 839
AspS9I	GGNCC	2 cut(s)	170, 464
AsuHPI	GGTGA	3 cut(s)	407, 865, 962
AsuNHI	GCTAGC	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	98, 141
Bbv12I	GWGCWC	2 cut(s)	24, 516
BbvI	GCAGC	1 cut(s)	894
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	4 cut(s)	80, 167, 246, 611
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	938
BglII	AGATCT	3 cut(s)	63, 709, 883
BisI	GCNGC	1 cut(s)	908
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	909
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	170, 464
BmiI	GGNNCC	2 cut(s)	243, 268
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	451, 543, 597
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	98, 141
BpuEI	CTTGAG	2 cut(s)	299, 925
Bsa29I	ATCGAT	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	1054
Bse3DI	GCAATG	2 cut(s)	173, 432
BseBI	CCWGG	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	956
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	163, 256
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	2 cut(s)	173, 432
BseMII	CTCAG	2 cut(s)	226, 602
BseSI	GKGCMC	1 cut(s)	803
BseXI	GCAGC	1 cut(s)	894
BseYI	CCCAGC	1 cut(s)	594
BsgI	GTGCAG	2 cut(s)	760, 966
BshFI	GGCC	4 cut(s)	171, 480, 790, 1054
BshVI	ATCGAT	1 cut(s)	956
BsiHKAI	GWGCWC	2 cut(s)	24, 516
BsiSI	CCGG	2 cut(s)	110, 1055
BslFI	GGGAC	2 cut(s)	468, 612
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	2 cut(s)	468, 612
BsnI	GGCC	4 cut(s)	171, 480, 790, 1054
Bsp1286I	GDGCHC	4 cut(s)	24, 516, 803, 858
Bsp143I	GATC	5 cut(s)	63, 160, 709, 829, 883
BspANI	GGCC	4 cut(s)	171, 480, 790, 1054
BspCNI	CTCAG	2 cut(s)	225, 601
BspDI	ATCGAT	1 cut(s)	956
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	243, 268
BspMAI	CTGCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	938
BspOI	GCTAGC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	173, 432
BsrFI	RCCGGY	1 cut(s)	1054
BssAI	RCCGGY	1 cut(s)	1054
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	5 cut(s)	63, 160, 709, 829, 883
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	3 cut(s)	317, 816, 1034
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	532, 612, 739, 905
BstDEI	CTNAG	5 cut(s)	212, 446, 588, 833, 985
BstF5I	GGATG	2 cut(s)	163, 256
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	3 cut(s)	262, 387, 839
BstKTI	GATC	5 cut(s)	66, 163, 712, 832, 886
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	5 cut(s)	63, 160, 709, 829, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	803
BstV1I	GCAGC	1 cut(s)	894
BstV2I	GAAGAC	2 cut(s)	98, 141
BstX2I	RGATCY	3 cut(s)	63, 709, 883
BstYI	RGATCY	3 cut(s)	63, 709, 883
Bsu15I	ATCGAT	1 cut(s)	956
BsuRI	GGCC	4 cut(s)	171, 480, 790, 1054
BsuTUI	ATCGAT	1 cut(s)	956
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	163, 256
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	938
Cac8I	GCNNGC	4 cut(s)	532, 612, 739, 905
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	3 cut(s)	262, 387, 839
Cfr10I	RCCGGY	1 cut(s)	1054
Cfr13I	GGNCC	2 cut(s)	170, 464
ClaI	ATCGAT	1 cut(s)	956
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	3 cut(s)	356, 496, 935
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	5 cut(s)	212, 446, 588, 833, 985
DpnI	GATC	5 cut(s)	65, 162, 711, 831, 885
DpnII	GATC	5 cut(s)	63, 160, 709, 829, 883
DrdI	GACNNNNNNGTC	1 cut(s)	360
DseDI	GACNNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	3 cut(s)	317, 816, 1034
EarI	CTCTTC	3 cut(s)	317, 816, 1034
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	464
Eco47III	AGCGCT	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	359, 499, 938
FalI	AAGNNNNNCTT	4 cut(s)	75, 107, 680, 712
FaqI	GGGAC	2 cut(s)	468, 612
FatI	CATG	3 cut(s)	355, 495, 934
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	908
FokI	GGATG	2 cut(s)	170, 263
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	1 cut(s)	908
FspBI	CTAG	4 cut(s)	80, 167, 246, 611
FspI	TGCGCA	2 cut(s)	261, 386
GlaI	GCGC	3 cut(s)	261, 386, 838
GluI	GCNGC	1 cut(s)	908
GsaI	CCCAGC	1 cut(s)	598
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	4 cut(s)	171, 480, 790, 1054
HapII	CCGG	2 cut(s)	110, 1055
HhaI	GCGC	3 cut(s)	262, 387, 839
Hin1II	CATG	3 cut(s)	359, 499, 938
Hin6I	GCGC	3 cut(s)	260, 385, 837
HinP1I	GCGC	3 cut(s)	260, 385, 837
HindIII	AAGCTT	2 cut(s)	809, 1063
HinfI	GANTC	9 cut(s)	137, 195, 369, 406, 754, 870, 938, 953, 1026
HpaII	CCGG	2 cut(s)	110, 1055
HphI	GGTGA	3 cut(s)	407, 865, 962
Hpy166II	GTNNAC	3 cut(s)	353, 464, 845
Hpy188I	TCNGA	3 cut(s)	77, 591, 888
Hpy188III	TCNNGA	3 cut(s)	278, 410, 496
Hpy8I	GTNNAC	3 cut(s)	353, 464, 845
HpyAV	CCTTC	2 cut(s)	101, 341
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	7 cut(s)	16, 344, 442, 530, 741, 903, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	5 cut(s)	212, 446, 588, 833, 985
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	359, 499, 938
HspAI	GCGC	3 cut(s)	260, 385, 837
Kzo9I	GATC	5 cut(s)	63, 160, 709, 829, 883
LmnI	GCTCC	2 cut(s)	511, 734
LpnPI	CCDG	9 cut(s)	25, 123, 350, 507, 534, 580, 804, 933, 1068
Lsp1109I	GCAGC	1 cut(s)	894
LweI	GCATC	3 cut(s)	451, 543, 597
MaeI	CTAG	4 cut(s)	80, 167, 246, 611
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	1057
MalI	GATC	5 cut(s)	65, 162, 711, 831, 885
MboI	GATC	5 cut(s)	63, 160, 709, 829, 883
MboII	GAAGA	8 cut(s)	95, 98, 146, 155, 304, 481, 833, 1021
MflI	RGATCY	3 cut(s)	63, 709, 883
MhlI	GDGCHC	4 cut(s)	24, 516, 803, 858
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	5 cut(s)	142, 199, 660, 747, 1044
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	3 cut(s)	131, 932, 1020
MnlI	CCTC	5 cut(s)	178, 293, 320, 503, 817
Mox20I	TGGCCA	1 cut(s)	480
MroXI	GAANNNNTTC	2 cut(s)	199, 240
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	7 cut(s)	207, 474, 686, 978, 1005, 1016, 1075
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	2 cut(s)	110, 1055
MspR9I	CCNGG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	5 cut(s)	63, 160, 709, 829, 883
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	359, 499, 938
NlaIV	GGNNCC	2 cut(s)	243, 268
NsbI	TGCGCA	2 cut(s)	261, 386
NspI	RCATGY	1 cut(s)	359
PagI	TCATGA	1 cut(s)	495
PaqCI	CACCTGC	1 cut(s)	938
PciI	ACATGT	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	199, 240
PfeI	GAWTC	6 cut(s)	195, 369, 406, 754, 870, 953
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	1 cut(s)	909
PleI	GAGTC	3 cut(s)	131, 932, 1020
PpsI	GAGTC	3 cut(s)	131, 932, 1020
PscI	ACATGT	1 cut(s)	355
PshBI	ATTAAT	2 cut(s)	474, 1016
PsiI	TTATAA	2 cut(s)	678, 1041
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	243, 268
PspPI	GGNCC	2 cut(s)	170, 464
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	3 cut(s)	63, 709, 883
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	7 cut(s)	207, 474, 686, 978, 1005, 1016, 1075
SatI	GCNGC	1 cut(s)	908
Sau3AI	GATC	5 cut(s)	63, 160, 709, 829, 883
Sau96I	GGNCC	2 cut(s)	170, 464
SchI	GAGTC	3 cut(s)	131, 932, 1020
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	4 cut(s)	24, 516, 803, 858
SfaNI	GCATC	3 cut(s)	451, 543, 597
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	278, 940
SmoI	CTYRAG	2 cut(s)	278, 940
Sse9I	AATT	5 cut(s)	142, 199, 660, 747, 1044
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	4 cut(s)	80, 167, 246, 611
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	1 cut(s)	956
TasI	AATT	5 cut(s)	142, 199, 660, 747, 1044
TfiI	GAWTC	6 cut(s)	195, 369, 406, 754, 870, 953
Tru1I	TTAA	7 cut(s)	207, 474, 686, 978, 1005, 1016, 1075
Tru9I	TTAA	7 cut(s)	207, 474, 686, 978, 1005, 1016, 1075
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	907
TspDTI	ATGAA	3 cut(s)	304, 672, 821
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	464
VspI	ATTAAT	2 cut(s)	474, 1016
XapI	RAATTY	2 cut(s)	142, 1044
XceI	RCATGY	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	352
XmnI	GAANNNNTTC	2 cut(s)	199, 240
XspI	CTAG	4 cut(s)	80, 167, 246, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.