Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

24553338 .. 24555061

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTAGAAGAAGGATTACTGCTAGGGAAAAATTATCCTTTTGGACAAATGGCAACTTTGACGAAAGGGTCTTTAATGAATTAGCGAGGACGGGTTTTGATCATTTATATAGAGTAGCAAGGCTTTTGGGTCGATGTCATCATGACAATGCTATGGTTCGAGCTCTTATACATACTTATAGTGTTGGGGATAATGTTTTTAGAGTTCAAGGTAGGGATATATTTTTTGGTTTAGAAGACGTAGTCTATATTACTGGGCTTAAGATTAGTGGGAAATTAGTGGTGAAGGAAGAACCGGTGATCGATGGTGACAGGAAGAAGGATGCAACCATCAAAGTAAGAGGGTTGGGTGAGGTGCCTACTAGTCACATGAAGTCGATGGTTATGCTGTTGAGTTCAATTGGAGCGGTATTATTAGCCACTAATGATCACAAGTATGTGAACTTGTGCTACTTGAAGAGTTTTTCTTGGGAGGGACTTAGGCAATATGCATGGGGACATGCAATCCTCGCCCACATGCACTATTGTATGGTGTCTTGTGCGTCGAATGACAACAAGACATCTATAGGTACTCACATGTTCATGCTCATGATGTGGGTGATCGAGCATATCCCTAGCTTTGTTGCAGAATTCTTTGGGGCCGACTTTGATGATTATCCTATAGTGTTTCCATTGTCGGTTGGTTGGGCACCACCGATTGCCTCAAAGCTAGGAAATAGGCACAGAGAAAGGAAATACCAGTTGCAATTGGATCATCTTTGGGACAACGATAATCGGCAGCCCTTTACATACCATCGTCCAGATCTTTGTCCAAATCAACTTGGGTTTAGAGAGGCCGATGCGAGTCATGTTCCTCCCTTGCTTCAAAATGTGAAGAGATTTCGAAGTTGGGAGCCATATTTCAAAGCGTGGCGTGATGCGGGGGACTGCTTGGTGAGGGAAGGCAGACCCATGAGGGAGGGGAAGGCGGACCCCGGTTCGTTGTTTATCAAAGGAAGAGAAGGAGGGCGGCAGTCACGACTTACAATCGACTTCCGCCATTTTTCAATTGTAGATGAGGAAGGCGTCTCCCGGTTGGCTGTTTATCGAAGGAAGAGAAGGGGTGGTGCAGTTATTTTCTTCGACAATCGACTTGCTGCATTTTTCAATTCCGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

386

Amino Acids

44.58

Weight (kDa)

9.37

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	47 - 253	5e-09	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	355, 688
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	5 cut(s)	407, 920, 968, 1009, 1036
AclWI	GGATC	1 cut(s)	759
AcsI	RAATTY	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	1065
AfaI	GTAC	1 cut(s)	571
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	576
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	7 cut(s)	209, 399, 457, 866, 904, 1047, 1147
AhlI	ACTAGT	1 cut(s)	362
AluBI	AGCT	3 cut(s)	164, 618, 709
AluI	AGCT	3 cut(s)	164, 618, 709
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	1072
AlwI	GGATC	1 cut(s)	759
AoxI	GGCC	2 cut(s)	639, 834
ApeKI	GCWGC	2 cut(s)	778, 1136
ApoI	RAATTY	1 cut(s)	629
AsiGI	ACCGGT	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	639, 970
AsuC2I	CCSGG	2 cut(s)	975, 1072
AsuHPI	GGTGA	6 cut(s)	295, 310, 320, 362, 610, 946
AsuII	TTCGAA	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	970
BaeGI	GKGCMC	1 cut(s)	691
BanI	GGYRCC	2 cut(s)	355, 688
BanII	GRGCYC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	790, 1123
BccI	CCATC	4 cut(s)	299, 338, 373, 801
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BclI	TGATCA	2 cut(s)	100, 427
BcnI	CCSGG	2 cut(s)	975, 1072
BcoDI	GTCTC	1 cut(s)	1072
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	6 cut(s)	6, 24, 363, 615, 710, 1159
BfmI	CTRYAG	2 cut(s)	564, 660
BfrI	CTTAAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	3 cut(s)	779, 1010, 1137
BlsI	GCNGC	3 cut(s)	780, 1011, 1138
Bme1390I	CCNGG	2 cut(s)	975, 1072
Bme18I	GGWCC	1 cut(s)	970
BmgT120I	GGNCC	2 cut(s)	639, 970
BmiI	GGNNCC	5 cut(s)	357, 640, 690, 894, 972
BmrFI	CCNGG	2 cut(s)	975, 1072
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	313, 829, 907
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	883
BpuMI	CCSGG	2 cut(s)	975, 1072
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	1065
BsaJI	CCNNGG	1 cut(s)	973
BsaWI	WCCGGW	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	259, 739
Bse8I	GATNNNNATC	1 cut(s)	654
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	973
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	654
BseNI	ACTGG	2 cut(s)	259, 739
BseSI	GKGCMC	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	790, 1123
BsgI	GTGCAG	1 cut(s)	1128
BshFI	GGCC	2 cut(s)	641, 836
BshNI	GGYRCC	2 cut(s)	355, 688
BshTI	ACCGGT	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	296, 975, 1072
BslFI	GGGAC	4 cut(s)	489, 510, 776, 938
BsmAI	GTCTC	1 cut(s)	1072
BsmBI	CGTCTC	1 cut(s)	1072
BsmFI	GGGAC	4 cut(s)	489, 510, 776, 938
BsnI	GGCC	2 cut(s)	641, 836
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	2 cut(s)	166, 691
Bsp143I	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
BspACI	CCGC	5 cut(s)	407, 920, 968, 1009, 1036
BspANI	GGCC	2 cut(s)	641, 836
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	2 cut(s)	142, 588
BspLI	GGNNCC	5 cut(s)	357, 640, 690, 894, 972
BspPI	GGATC	1 cut(s)	759
BspT104I	TTCGAA	1 cut(s)	883
BspT107I	GGYRCC	2 cut(s)	355, 688
BspTI	CTTAAG	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	259, 739
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	973
BssMI	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
BssNI	GRCGYC	1 cut(s)	1065
Bst6I	CTCTTC	4 cut(s)	452, 869, 991, 1088
BstACI	GRCGYC	1 cut(s)	1065
BstAFI	CTTAAG	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	883
BstDEI	CTNAG	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	6 cut(s)	103, 303, 430, 603, 754, 805
BstMAI	GTCTC	1 cut(s)	1072
BstMBI	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNSI	RCATGY	3 cut(s)	503, 520, 580
BstSCI	CCNGG	2 cut(s)	973, 1070
BstSFI	CTRYAG	2 cut(s)	564, 660
BstSLI	GKGCMC	1 cut(s)	691
BstV1I	GCAGC	2 cut(s)	790, 1123
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	641, 836
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	328
CciI	TCATGA	2 cut(s)	142, 588
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	639, 970
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	2 cut(s)	531, 1054
Csp6I	GTAC	1 cut(s)	570
CspAI	ACCGGT	1 cut(s)	295
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	6 cut(s)	102, 302, 429, 602, 753, 804
DpnII	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	4 cut(s)	452, 869, 991, 1088
EarI	CTCTTC	4 cut(s)	452, 869, 991, 1088
EciI	GGCGGA	2 cut(s)	983, 1025
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	970
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	1072
FaqI	GGGAC	4 cut(s)	489, 510, 776, 938
FauI	CCCGC	1 cut(s)	913
FbaI	TGATCA	2 cut(s)	100, 427
Fnu4HI	GCNGC	3 cut(s)	779, 1010, 1137
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	779, 1010, 1137
FspBI	CTAG	6 cut(s)	6, 24, 363, 615, 710, 1159
GluI	GCNGC	3 cut(s)	779, 1010, 1137
HaeIII	GGCC	2 cut(s)	641, 836
HapII	CCGG	3 cut(s)	296, 975, 1072
HgaI	GACGC	2 cut(s)	531, 1054
Hin1I	GRCGYC	1 cut(s)	1065
HinfI	GANTC	1 cut(s)	844
HpaII	CCGG	3 cut(s)	296, 975, 1072
HphI	GGTGA	6 cut(s)	295, 310, 320, 362, 610, 946
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	1153
Hpy188III	TCNNGA	4 cut(s)	143, 589, 800, 1017
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	9 cut(s)	6, 280, 313, 935, 958, 995, 1055, 1083, 1092
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	326, 491, 503, 520, 626, 745, 1109, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	1065
Ksp22I	TGATCA	2 cut(s)	100, 427
Kzo9I	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
LmnI	GCTCC	2 cut(s)	404, 892
LpnPI	CCDG	7 cut(s)	240, 298, 309, 752, 813, 988, 1085
Lsp1109I	GCAGC	2 cut(s)	790, 1123
LweI	GCATC	3 cut(s)	313, 829, 907
MaeI	CTAG	6 cut(s)	6, 24, 363, 615, 710, 1159
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	308, 365, 1014
MalI	GATC	6 cut(s)	102, 302, 429, 602, 753, 804
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
MboII	GAAGA	9 cut(s)	21, 248, 302, 328, 469, 886, 1008, 1105, 1111
MfeI	CAATTG	3 cut(s)	399, 746, 1047
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	2 cut(s)	166, 691
MluCI	AATT	8 cut(s)	32, 80, 275, 399, 629, 746, 1047, 1147
MlyI	GAGTC	1 cut(s)	853
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	2 cut(s)	75, 261
MslI	CAYNNNNRTG	4 cut(s)	147, 435, 581, 587
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	3 cut(s)	296, 975, 1072
MspR9I	CCNGG	2 cut(s)	975, 1072
MunI	CAATTG	3 cut(s)	399, 746, 1047
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	2 cut(s)	975, 1072
NdeII	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
NlaIV	GGNNCC	5 cut(s)	357, 640, 690, 894, 972
NmuCI	GTSAC	3 cut(s)	308, 365, 1014
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	3 cut(s)	503, 520, 580
NspV	TTCGAA	1 cut(s)	883
PagI	TCATGA	2 cut(s)	142, 588
PciI	ACATGT	1 cut(s)	576
PflFI	GACNNNGTC	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	780, 1011, 1138
PleI	GAGTC	1 cut(s)	852
PpsI	GAGTC	1 cut(s)	852
PscI	ACATGT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	166
PspN4I	GGNNCC	5 cut(s)	357, 640, 690, 894, 972
PspPI	GGNCC	2 cut(s)	639, 970
PsrI	GAACNNNNNNTAC	2 cut(s)	434, 466
PsuI	RGATCY	1 cut(s)	802
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	4 cut(s)	147, 435, 581, 587
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	75, 261
SatI	GCNGC	3 cut(s)	779, 1010, 1137
Sau3AI	GATC	6 cut(s)	100, 300, 427, 600, 751, 802
Sau96I	GGNCC	2 cut(s)	639, 970
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	2 cut(s)	975, 1072
SduI	GDGCHC	2 cut(s)	166, 691
SetI	ASST	7 cut(s)	166, 214, 243, 357, 571, 620, 711
SfaNI	GCATC	3 cut(s)	313, 829, 907
SfcI	CTRYAG	2 cut(s)	564, 660
SfuI	TTCGAA	1 cut(s)	883
SinI	GGWCC	1 cut(s)	970
SmiMI	CAYNNNNRTG	4 cut(s)	147, 435, 581, 587
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	8 cut(s)	32, 80, 275, 399, 629, 746, 1047, 1147
SsiI	CCGC	5 cut(s)	407, 920, 968, 1009, 1036
SspMI	CTAG	6 cut(s)	6, 24, 363, 615, 710, 1159
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	973, 1070
TaiI	ACGT	1 cut(s)	243
TasI	AATT	8 cut(s)	32, 80, 275, 399, 629, 746, 1047, 1147
TauI	GCSGC	1 cut(s)	1012
Tru1I	TTAA	2 cut(s)	75, 261
Tru9I	TTAA	2 cut(s)	75, 261
TseFI	GTSAC	3 cut(s)	308, 365, 1014
TseI	GCWGC	2 cut(s)	778, 1136
Tsp45I	GTSAC	3 cut(s)	308, 365, 1014
TspDTI	ATGAA	3 cut(s)	93, 386, 571
Tth111I	GACNNNGTC	1 cut(s)	242
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	970
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	3 cut(s)	503, 520, 580
XspI	CTAG	6 cut(s)	6, 24, 363, 615, 710, 1159
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.