Rorug01G0210200

Serine threonine-protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
29732992 .. 29734384
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0210200.1

Sequence Viewer

Length: 1008 bp
ATGTCCGGAGCACCACCACCACCTCCACCGCCACCGCCACCGCCATTATCAACCTCCACCACCTCGCCACCTCACAACAACCGCTCATTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCCTCCTCATCGTCGTCGTCACCGTGGTGGCTTCATTTTCCCTCTGCCGAATCCTCCGCTGCATCAACAACCGCTTCCTCCGCCACGTCACTCCCTCCTCCGGCGACGACGCACCCGCCCGCACCTCCAGCCGGCGAGTCTCTCCTGCCGAATCCGCTGCCGCCGATCCCGTCGCCGCGCTCCCGGTCTTCGCCTTCTCCGCCATCAAGAACCGCCGAGCCTCCTCCACCGCCGTCGTCGCCGCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACGACGATCAGCTCCGGTTGCTCCCTCTCTGCTGTCACGCCTTCCACGTCTCGTGCATCGACACATGGCTCCACTCCCAGCAGACCTGCCCGCTCTGCCGGTCGCCGATTTCCGCGTCGGACTCCGAGCTCATGACTCTGGTCGAGAATGCAGGCTCCTCCGCCCGCGGCGGCGGCGGCGATAGCTTCCGACTCGAGATTGGCAACGTCAGCCGCCGCCAAACAACTACGACGTCCAACTCCAGCGCGCGCCGCTCCTACTCCATCGGATCCTTCGACTACCTCGTCGACGACGACTCGGAGGTCCAATTGTCCAATGCCAGAAACGGCTCGTCTGATCGGAAAGAAGAGGTGATTGTCGTTCTCGGCGAGCTCCCGCCGCCGCCGCTGCCGTCGGAGGCCAGTCTAGCTGCTGACGTGGCCTCGGGAAGGAGCTGGCTCAAGGAATTCGTGGATAGACTCTCCAGCTCTTCTCTACGAAGCTCCGGCAGATTCTTTACCGGCAGTAGCCGTCGGAGTGAGATAGGCGGCACGGGAGAGTGGATATCGGAGTCCGGCCAAGTCGGCGTCGAGTTCTCCGAGTATTTCCGGTGGTTATCGGAGGTATGA

Protein Analysis

335

Amino Acids

35.86

Weight (kDa)

6.6

Isoelectric Point (pI)

72.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 124 - 167 8.8e-13 Ring finger domain
zf-RING_11 PF17123 124 - 153 8.7e-09 RING-like zinc finger
zf-rbx1 PF12678 134 - 167 3.6e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 377, 683, 701
AatII GACGTC 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 494
AccBSI CCGCTC 3 cut(s) 84, 493, 654
AccI GTMKAC 1 cut(s) 687
AccII CGCG 5 cut(s) 302, 515, 567, 647, 649
AccIII TCCGGA 1 cut(s) 5
AclWI GGATC 3 cut(s) 284, 663, 676
AcoI YGGCCR 1 cut(s) 955
AcsI RAATTY 1 cut(s) 845
AcyI GRCGYC 2 cut(s) 632, 966
AfiI CCNNNNNNNGG 3 cut(s) 224, 255, 828
AflII CTTAAG 1 cut(s) 103
AjiI CACGTC 3 cut(s) 211, 448, 817
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 8 cut(s) 412, 529, 585, 772, 809, 834, 867, 882
AluI AGCT 8 cut(s) 412, 529, 585, 772, 809, 834, 867, 882
Alw21I GWGCWC 4 cut(s) 13, 402, 531, 774
Alw26I GTCTC 2 cut(s) 268, 454
AlwI GGATC 3 cut(s) 284, 663, 676
Ama87I CYCGRG 2 cut(s) 593, 823
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 3 cut(s) 798, 819, 955
ApeKI GCWGC 4 cut(s) 183, 281, 787, 809
ApoI RAATTY 1 cut(s) 845
AspLEI GCGC 5 cut(s) 304, 377, 647, 649, 651
AspS9I GGNCC 1 cut(s) 703
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 136, 763
AvaI CYCGRG 2 cut(s) 593, 823
AvaII GGWCC 1 cut(s) 703
BamHI GGATCC 1 cut(s) 668
BanII GRGCYC 2 cut(s) 531, 774
BauI CACGAG 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 4 cut(s) 13, 402, 531, 774
BbvI GCAGC 4 cut(s) 170, 268, 774, 796
BccI CCATC 2 cut(s) 335, 671
BceAI ACGGC 5 cut(s) 341, 362, 742, 775, 894
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 268, 454
BfaI CTAG 1 cut(s) 806
BfrI CTTAAG 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 963
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 703
BmeT110I CYCGRG 2 cut(s) 593, 823
BmgBI CACGTC 3 cut(s) 211, 448, 817
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 3 cut(s) 470, 556, 670
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 195, 465
BoxI GACNNNNGTC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 3 cut(s) 235, 625, 847
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 2 cut(s) 632, 966
BsaJI CCNNGG 3 cut(s) 147, 565, 822
BsaWI WCCGGW 3 cut(s) 5, 414, 987
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 255, 828
Bse118I RCCGGY 3 cut(s) 255, 498, 899
Bse1I ACTGG 1 cut(s) 801
BseAI TCCGGA 1 cut(s) 5
BseDI CCNNGG 3 cut(s) 147, 565, 822
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 3 cut(s) 224, 255, 828
BseNI ACTGG 1 cut(s) 801
BsePI GCGCGC 2 cut(s) 645, 647
BseRI GAGGAG 4 cut(s) 119, 211, 337, 547
BseXI GCAGC 4 cut(s) 170, 268, 774, 796
BseYI CCCAGC 1 cut(s) 477
Bsh1236I CGCG 5 cut(s) 302, 515, 567, 647, 649
Bsh1285I CGRYCG 1 cut(s) 503
BshFI GGCC 3 cut(s) 800, 821, 957
BsiEI CGRYCG 1 cut(s) 503
BsiHKAI GWGCWC 4 cut(s) 13, 402, 531, 774
BsiHKCI CYCGRG 2 cut(s) 593, 823
BslI CCNNNNNNNGG 3 cut(s) 224, 255, 828
BsmAI GTCTC 2 cut(s) 268, 454
BsmBI CGTCTC 1 cut(s) 454
BsmI GAATGC 2 cut(s) 114, 553
BsnI GGCC 3 cut(s) 800, 821, 957
BsoBI CYCGRG 2 cut(s) 593, 823
Bsp1286I GDGCHC 4 cut(s) 13, 402, 531, 774
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 4 cut(s) 289, 406, 668, 736
BspANI GGCC 3 cut(s) 800, 821, 957
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 5 cut(s) 302, 515, 567, 647, 649
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 3 cut(s) 470, 556, 670
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 284, 663, 676
BspQI GCTCTTC 1 cut(s) 874
BspTI CTTAAG 1 cut(s) 103
BsrBI CCGCTC 3 cut(s) 84, 493, 654
BsrFI RCCGGY 3 cut(s) 255, 498, 899
BsrI ACTGG 1 cut(s) 801
BssAI RCCGGY 3 cut(s) 255, 498, 899
BssECI CCNNGG 3 cut(s) 147, 565, 822
BssHII GCGCGC 2 cut(s) 645, 647
BssMI GATC 4 cut(s) 289, 406, 668, 736
BssNI GRCGYC 2 cut(s) 632, 966
BssSI CACGAG 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 94, 148
Bst6I CTCTTC 2 cut(s) 741, 874
BstACI GRCGYC 2 cut(s) 632, 966
BstAFI CTTAAG 1 cut(s) 103
BstC8I GCNNGC 9 cut(s) 244, 257, 491, 553, 565, 647, 649, 770, 836
BstDSI CCRYGG 2 cut(s) 147, 565
BstENI CCTNNNNNAGG 1 cut(s) 826
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 5 cut(s) 302, 515, 567, 647, 649
BstHHI GCGC 5 cut(s) 304, 377, 647, 649, 651
BstKTI GATC 4 cut(s) 292, 409, 671, 739
BstMAI GTCTC 2 cut(s) 268, 454
BstMBI GATC 4 cut(s) 289, 406, 668, 736
BstMCI CGRYCG 1 cut(s) 503
BstPAI GACNNNNGTC 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 306
BstUI CGCG 5 cut(s) 302, 515, 567, 647, 649
BstV1I GCAGC 4 cut(s) 170, 268, 774, 796
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 668
BstYI RGATCY 1 cut(s) 668
BsuRI GGCC 3 cut(s) 800, 821, 957
BtgI CCRYGG 2 cut(s) 147, 565
BtrI CACGTC 3 cut(s) 211, 448, 817
BtsCI GGATG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 9 cut(s) 244, 257, 491, 553, 565, 647, 649, 770, 836
CciI TCATGA 1 cut(s) 531
CfoI GCGC 5 cut(s) 304, 377, 647, 649, 651
Cfr10I RCCGGY 3 cut(s) 255, 498, 899
Cfr13I GGNCC 1 cut(s) 703
Cfr42I CCGCGG 1 cut(s) 568
CseI GACGC 3 cut(s) 242, 504, 955
CviAII CATG 2 cut(s) 465, 532
DpnI GATC 4 cut(s) 291, 408, 670, 738
DpnII GATC 4 cut(s) 289, 406, 668, 736
DrdI GACNNNNNNGTC 3 cut(s) 377, 683, 701
DseDI GACNNNNNNGTC 3 cut(s) 377, 683, 701
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 2 cut(s) 741, 874
EarI CTCTTC 2 cut(s) 741, 874
EciI GGCGGA 3 cut(s) 194, 313, 550
Ecl136II GAGCTC 2 cut(s) 529, 772
Eco24I GRGCYC 2 cut(s) 531, 774
Eco32I GATATC 1 cut(s) 945
Eco47I GGWCC 1 cut(s) 703
Eco53kI GAGCTC 2 cut(s) 529, 772
Eco88I CYCGRG 2 cut(s) 593, 823
EcoICRI GAGCTC 2 cut(s) 529, 772
EcoNI CCTNNNNNAGG 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 845
EcoRV GATATC 1 cut(s) 945
EcoT38I GRGCYC 2 cut(s) 531, 774
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 2 cut(s) 468, 535
FaiI YATR 3 cut(s) 466, 533, 1006
FatI CATG 2 cut(s) 464, 531
FauI CCCGC 5 cut(s) 247, 251, 498, 572, 783
FblI GTMKAC 1 cut(s) 687
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 2 cut(s) 531, 774
FspBI CTAG 1 cut(s) 806
GlaI GCGC 5 cut(s) 303, 376, 646, 648, 650
GsaI CCCAGC 1 cut(s) 481
GsuI CTGGAG 3 cut(s) 235, 625, 847
HaeIII GGCC 3 cut(s) 800, 821, 957
HgaI GACGC 3 cut(s) 242, 504, 955
HhaI GCGC 5 cut(s) 304, 377, 647, 649, 651
Hin1I GRCGYC 2 cut(s) 632, 966
Hin1II CATG 2 cut(s) 468, 535
Hin6I GCGC 5 cut(s) 302, 375, 645, 647, 649
HinP1I GCGC 5 cut(s) 302, 375, 645, 647, 649
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HphI GGTGA 2 cut(s) 136, 763
Hpy166II GTNNAC 1 cut(s) 688
Hpy188III TCNNGA 7 cut(s) 6, 331, 388, 532, 544, 595, 825
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 4 cut(s) 328, 451, 682, 822
HpyCH4III ACNGT 2 cut(s) 94, 148
HpyCH4IV ACGT 5 cut(s) 210, 447, 606, 632, 816
HpyCH4V TGCA 3 cut(s) 186, 456, 551
HpySE526I ACGT 5 cut(s) 210, 447, 606, 632, 816
Hsp92I GRCGYC 2 cut(s) 632, 966
Hsp92II CATG 2 cut(s) 468, 535
HspAI GCGC 5 cut(s) 302, 375, 645, 647, 649
Kpn2I TCCGGA 1 cut(s) 5
KroI GCCGGC 1 cut(s) 255
KroNI GCCGGC 1 cut(s) 257
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 4 cut(s) 289, 406, 668, 736
LguI GCTCTTC 1 cut(s) 874
Lsp1109I GCAGC 4 cut(s) 170, 268, 774, 796
LweI GCATC 2 cut(s) 195, 465
MaeI CTAG 1 cut(s) 806
MaeII ACGT 5 cut(s) 210, 447, 606, 632, 816
MaeIII GTNAC 3 cut(s) 142, 211, 434
MalI GATC 4 cut(s) 291, 408, 670, 738
MbiI CCGCTC 3 cut(s) 84, 493, 654
MboI GATC 4 cut(s) 289, 406, 668, 736
MboII GAAGA 3 cut(s) 304, 758, 861
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 4 cut(s) 13, 402, 531, 774
MluCI AATT 2 cut(s) 707, 845
MlyI GAGTC 7 cut(s) 270, 515, 529, 585, 689, 852, 959
MmeI TCCRAC 5 cut(s) 498, 613, 660, 774, 893
MroI TCCGGA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 255
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 4 cut(s) 183, 281, 567, 787
MspCI CTTAAG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 707
Mva1269I GAATGC 2 cut(s) 114, 553
MvnI CGCG 5 cut(s) 302, 515, 567, 647, 649
NaeI GCCGGC 1 cut(s) 257
NciI CCSGG 1 cut(s) 308
NdeII GATC 4 cut(s) 289, 406, 668, 736
NgoMIV GCCGGC 1 cut(s) 255
NlaIII CATG 2 cut(s) 468, 535
NlaIV GGNNCC 3 cut(s) 470, 556, 670
NmeAIII GCCGAG 2 cut(s) 365, 744
NmuCI GTSAC 3 cut(s) 142, 211, 434
OliI CACNNNNGTG 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 593
PagI TCATGA 1 cut(s) 531
PauI GCGCGC 2 cut(s) 645, 647
PciSI GCTCTTC 1 cut(s) 874
PcsI WCGNNNNNNNCGW 9 cut(s) 144, 366, 402, 444, 672, 681, 690, 765, 975
PctI GAATGC 2 cut(s) 114, 553
PdiI GCCGGC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 174, 275, 891
PleI GAGTC 7 cut(s) 269, 515, 529, 585, 689, 852, 958
PpsI GAGTC 7 cut(s) 269, 515, 529, 585, 689, 852, 958
PshAI GACNNNNGTC 1 cut(s) 539
Psp124BI GAGCTC 2 cut(s) 531, 774
PspFI CCCAGC 1 cut(s) 477
PspN4I GGNNCC 3 cut(s) 470, 556, 670
PspPI GGNCC 1 cut(s) 703
PsuI RGATCY 1 cut(s) 668
PteI GCGCGC 2 cut(s) 645, 647
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 2 cut(s) 531, 774
SacII CCGCGG 1 cut(s) 568
SalI GTCGAC 1 cut(s) 686
SapI GCTCTTC 1 cut(s) 874
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 4 cut(s) 289, 406, 668, 736
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 7 cut(s) 270, 515, 529, 585, 689, 852, 959
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 4 cut(s) 13, 402, 531, 774
SfaNI GCATC 2 cut(s) 195, 465
Sfr274I CTCGAG 1 cut(s) 593
Sfr303I CCGCGG 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 568
SgrDI CGTCGACG 1 cut(s) 686
SinI GGWCC 1 cut(s) 703
SlaI CTCGAG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 103, 593, 839
SmoI CTYRAG 3 cut(s) 103, 593, 839
Sse9I AATT 2 cut(s) 707, 845
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 2 cut(s) 531, 774
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 94, 148
TaiI ACGT 5 cut(s) 213, 450, 609, 635, 819
TaqI TCGA 8 cut(s) 389, 396, 459, 543, 594, 675, 687, 969
TasI AATT 2 cut(s) 707, 845
TfiI GAWTC 3 cut(s) 174, 275, 891
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseFI GTSAC 3 cut(s) 142, 211, 434
TseI GCWGC 4 cut(s) 183, 281, 787, 809
Tsp45I GTSAC 3 cut(s) 142, 211, 434
TspDTI ATGAA 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 703
XagI CCTNNNNNAGG 1 cut(s) 826
XapI RAATTY 1 cut(s) 845
XhoI CTCGAG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 1 cut(s) 806
ZraI GACGTC 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.