Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

82811807 .. 82814834

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG598200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAGTATGAGACCAAGAAGGGAGCTAATATTGGAGGTAACATGTACTTCTTGATGGTGTGGGCGTTGGAGCATCTCCCTGCCTTTCGAGATAGTCTAGGGGTTTTGGTTCCTGCACAGTGCGATTTCCCGCTGGCCTGTAGCTGGGCATTAGCCCTTTCCAAAAAGCTTGCTAACAGGAACCGGCATCAGTCCTACAGTCAGCTGCTGGATCAGCCTTGCGAGGTTGATTGGAATCCTTATTCTAGGCTGGGAGATACTTTTCTCCTCGAGGGGATTAGCAACCAGCGACGGATGAGAGCGTATCGTGGGGTTCTAGTCAACGCTTTCCACAAGCAGCCCCTAGTCTACCATCGTCCTGAGTTTTGCCCAAGGAAACTGCAGTTTTCAACGGTGGATGTGAGCGGTTGTCGCCCCTTGTGGCAAATTAAAATCTCGGACAAGACTGGTAAAGAAGTAACAGTACGGAACTGGACAAAACATAAAGCAGAGTGGGATAACTTTGAGCAATGTTTTGTGACCGGGGCACCTTTGGCTAGTGATGGTAGCTCCACCTTGAGAAGCAATGGTAGGGCTTTAAAGCATCAATTCAAGCTTGGTGAGCAGCTTGGTAAGCTTTTGTTTCTTCCTAGTCAGGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

214

Amino Acids

24.5

Weight (kDa)

9.53

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	2 cut(s)	131, 405
AclWI	GGATC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	47, 465
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	390, 592
AluBI	AGCT	8 cut(s)	26, 144, 169, 205, 549, 595, 607, 616
AluI	AGCT	8 cut(s)	26, 144, 169, 205, 549, 595, 607, 616
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	205, 337, 604
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	526
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbvI	GCAGC	3 cut(s)	192, 349, 616
BccI	CCATC	3 cut(s)	49, 360, 536
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	6 cut(s)	98, 246, 317, 344, 537, 630
BfmI	CTRYAG	3 cut(s)	139, 196, 380
BisI	GCNGC	3 cut(s)	206, 338, 605
BlsI	GCNGC	3 cut(s)	207, 339, 606
Bme1390I	CCNGG	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	111, 182, 528
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	3 cut(s)	82, 196, 592
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	371, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	451, 476
Bse3DI	GCAATG	2 cut(s)	515, 571
Bse8I	GATNNNNATC	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	371, 522
BseGI	GGATG	2 cut(s)	300, 403
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	515, 571
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	451, 476
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	3 cut(s)	192, 349, 616
BseYI	CCCAGC	2 cut(s)	144, 250
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	184, 522
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	2 cut(s)	131, 405
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	111, 182, 528
BspMAI	CTGCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	526
BspTNI	GGTCTC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	515, 571
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	451, 476
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	371, 522
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	4 cut(s)	120, 200, 394, 463
BstC8I	GCNNGC	2 cut(s)	135, 171
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	300, 403
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 411, 533, 601, 613
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	3 cut(s)	139, 196, 380
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	3 cut(s)	192, 349, 616
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	300, 403
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	135, 171
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	46, 464
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	2 cut(s)	46, 464
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DraI	TTTAAA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	5
Eco88I	CYCGRG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	9, 44, 483
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	206, 338, 605
FokI	GGATG	2 cut(s)	307, 410
Fsp4HI	GCNGC	3 cut(s)	206, 338, 605
FspBI	CTAG	6 cut(s)	98, 246, 317, 344, 537, 630
GluI	GCNGC	3 cut(s)	206, 338, 605
GsaI	CCCAGC	2 cut(s)	148, 254
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	184, 522
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	3 cut(s)	167, 593, 614
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	184, 522
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	322, 349
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	3 cut(s)	52, 89, 359
Hpy8I	GTNNAC	2 cut(s)	322, 349
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	4 cut(s)	120, 200, 394, 463
HpyCH4V	TGCA	2 cut(s)	116, 382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 411, 533, 601, 613
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	3 cut(s)	23, 70, 554
Lsp1109I	GCAGC	3 cut(s)	192, 349, 616
LweI	GCATC	3 cut(s)	82, 196, 592
MaeI	CTAG	6 cut(s)	98, 246, 317, 344, 537, 630
MaeIII	GTNAC	3 cut(s)	38, 457, 517
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	1 cut(s)	211
MboII	GAAGA	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	2 cut(s)	426, 587
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	29, 217, 265, 278
MseI	TTAA	2 cut(s)	429, 578
MspA1I	CMGCKG	2 cut(s)	133, 205
MspI	CCGG	2 cut(s)	184, 522
MspR9I	CCNGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	5 cut(s)	214, 411, 533, 601, 613
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	3 cut(s)	111, 182, 528
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	269
PciI	ACATGT	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	207, 339, 606
PscI	ACATGT	1 cut(s)	42
PspFI	CCCAGC	2 cut(s)	144, 250
PspN4I	GGNNCC	3 cut(s)	111, 182, 528
PspXI	VCTCGAGB	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	47, 465
RsaNI	GTAC	2 cut(s)	46, 464
SaqAI	TTAA	2 cut(s)	429, 578
SatI	GCNGC	3 cut(s)	206, 338, 605
Sau3AI	GATC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	82, 196, 592
SfcI	CTRYAG	3 cut(s)	139, 196, 380
Sfr274I	CTCGAG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	269, 556
SmoI	CTYRAG	2 cut(s)	269, 556
Sse9I	AATT	2 cut(s)	426, 587
SsiI	CCGC	2 cut(s)	131, 405
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	6 cut(s)	98, 246, 317, 344, 537, 630
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	120, 200, 394, 463
TaqI	TCGA	2 cut(s)	88, 270
TasI	AATT	2 cut(s)	426, 587
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	429, 578
Tru9I	TTAA	2 cut(s)	429, 578
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	3 cut(s)	205, 337, 604
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	307, 481
TspRI	CASTG	1 cut(s)	125
XceI	RCATGY	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	6 cut(s)	98, 246, 317, 344, 537, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.