Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008004.1

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Forward (+)

43278 .. 45486

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008004.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgatagatgctcttgtgaagcattatgacaaaaatgatatgtgtttaaaagtccaggaccagcacttattctttggattagaagacgagttgttcattagtgggcttaaggttgaggggaagctagtgacaaagggagggatagaaaaagccatccaggtaagtagagtccaagatgaagaaggtaatagatatgtggaattttttggtaatgtgccatctcagtacatgaaggagggcggcaaagctataacttttgaagggttgcgaaggatgttcgagaaggtacccagagatgtcgattttgctagacatgttagagccttcgccctctatgttgtcaacacgacaatcacgggagttgcaatgctctcccaagtccactatagtttgatgaattatgagaccaagaagagggctaatattggaggtcacatctgggcatcaaccctttccaaaaagcttgctaacaggaaccggcatcagtcctacagtcagctgctggatcagccttgcgagcaaccagcgacggatgagaacgcatcgtggggttctagtcaacgctttccacaagcagcccctagtctaccatcgtcttgcgttttgccaaggaaactgcagttttcaacggtggatgtgagcggttgtcgccccgtgtggcaaattaaaatctcagacaagactggtaaagaagtaacagtacggaactggacaaaacataaagcagagtgggataactttgagcaatgttttgtgaccagggcacctttggctggacatgacattgttttggctggtgatggcacattccatttggaagagctgagagcagtgacggctagtggtttccctgtcccggaggaaaacgatggaggcttttatgatgatgatgaggaggaggaggatgatggtgatgatggtgatgatcgtgacatttcgtttcttacgtttcatgactactttgccaggcagaatgatgatatcaatgagcgagtcatctcttggaaattacgctctgacattaatgttagagattggaacacctccaccaagaagcctcctgtgaaaagggatagatacgcgccttccttggctctcaaaaaagttgctccaattttgcctgaagacgtagtgaaaaccaggcccaaatacgggactgaaccggaaaaaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

392

Amino Acids

44.63

Weight (kDa)

5.99

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	2 cut(s)	286, 763
AccBSI	CCGCTC	1 cut(s)	642
AccI	GTMKAC	1 cut(s)	586
AccII	CGCG	1 cut(s)	1082
AciI	CCGC	2 cut(s)	240, 642
AclWI	GGATC	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	1143
AfaI	GTAC	3 cut(s)	227, 288, 702
AfiI	CCNNNNNNNGG	5 cut(s)	414, 773, 856, 1151, 1152
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	260, 627
AjnI	CCWGG	5 cut(s)	54, 156, 758, 965, 1139
AluBI	AGCT	5 cut(s)	124, 248, 463, 499, 823
AluI	AGCT	5 cut(s)	124, 248, 463, 499, 823
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	502
AoxI	GGCC	1 cut(s)	1142
ApeKI	GCWGC	2 cut(s)	499, 575
ApoI	RAATTY	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	1023
Asp718I	GGTACC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	1084
AspS9I	GGNCC	2 cut(s)	58, 1143
AsuC2I	CCSGG	1 cut(s)	857
AsuHPI	GGTGA	3 cut(s)	809, 923, 932
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	766
BanI	GGYRCC	2 cut(s)	286, 763
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
BbsI	GAAGAC	2 cut(s)	90, 1131
BbvI	GCAGC	2 cut(s)	486, 587
BccI	CCATC	7 cut(s)	161, 226, 598, 794, 863, 902, 911
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	5 cut(s)	56, 158, 760, 967, 1141
BcnI	CCSGG	1 cut(s)	857
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	5 cut(s)	125, 309, 555, 582, 840
BfmI	CTRYAG	3 cut(s)	385, 490, 617
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	241, 500, 576
BlsI	GCNGC	3 cut(s)	242, 501, 577
Bme1390I	CCNGG	6 cut(s)	56, 158, 760, 857, 967, 1141
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 1143
BmiI	GGNNCC	3 cut(s)	288, 476, 765
BmrFI	CCNGG	6 cut(s)	56, 158, 760, 857, 967, 1141
BmsI	GCATC	3 cut(s)	452, 490, 551
BpiI	GAAGAC	2 cut(s)	90, 1131
BpuMI	CCSGG	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	608, 759, 1089
BsaWI	WCCGGW	1 cut(s)	1162
Bsc4I	CCNNNNNNNGG	5 cut(s)	414, 773, 856, 1151, 1152
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	2 cut(s)	688, 713
Bse3DI	GCAATG	2 cut(s)	372, 752
BseBI	CCWGG	5 cut(s)	56, 158, 760, 967, 1141
BseDI	CCNNGG	3 cut(s)	608, 759, 1089
BseGI	GGATG	5 cut(s)	153, 279, 538, 640, 910
BseLI	CCNNNNNNNGG	5 cut(s)	414, 773, 856, 1151, 1152
BseMI	GCAATG	2 cut(s)	372, 752
BseMII	CTCAG	3 cut(s)	236, 687, 815
BseNI	ACTGG	2 cut(s)	688, 713
BseRI	GAGGAG	3 cut(s)	908, 911, 914
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	2 cut(s)	486, 587
Bsh1236I	CGCG	1 cut(s)	1082
BshFI	GGCC	1 cut(s)	1144
BshNI	GGYRCC	2 cut(s)	286, 763
BsiSI	CCGG	3 cut(s)	478, 857, 1163
BslFI	GGGAC	2 cut(s)	839, 1168
BslI	CCNNNNNNNGG	5 cut(s)	414, 773, 856, 1151, 1152
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	839, 1168
BsnI	GGCC	1 cut(s)	1144
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	2 cut(s)	505, 925
BspACI	CCGC	2 cut(s)	240, 642
BspANI	GGCC	1 cut(s)	1144
BspCNI	CTCAG	3 cut(s)	235, 686, 816
BspFNI	CGCG	1 cut(s)	1082
BspHI	TCATGA	1 cut(s)	952
BspLI	GGNNCC	3 cut(s)	288, 476, 765
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	1 cut(s)	513
BspQI	GCTCTTC	1 cut(s)	813
BspT107I	GGYRCC	2 cut(s)	286, 763
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	642
BsrDI	GCAATG	2 cut(s)	372, 752
BsrFI	RCCGGY	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	688, 713
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	3 cut(s)	608, 759, 1089
BssMI	GATC	2 cut(s)	505, 925
BssT1I	CCWWGG	2 cut(s)	608, 1089
Bst2UI	CCWGG	5 cut(s)	56, 158, 760, 967, 1141
Bst4CI	ACNGT	3 cut(s)	494, 631, 700
Bst6I	CTCTTC	2 cut(s)	407, 813
BstAFI	CTTAAG	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	465, 518
BstDEI	CTNAG	3 cut(s)	222, 673, 824
BstF5I	GGATG	5 cut(s)	153, 279, 538, 640, 910
BstFNI	CGCG	1 cut(s)	1082
BstHHI	GCGC	1 cut(s)	1084
BstKTI	GATC	2 cut(s)	508, 928
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	505, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	508, 517, 648, 770, 836
BstNI	CCWGG	5 cut(s)	56, 158, 760, 967, 1141
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	6 cut(s)	54, 156, 758, 855, 965, 1139
BstSFI	CTRYAG	3 cut(s)	385, 490, 617
BstSLI	GKGCMC	1 cut(s)	766
BstUI	CGCG	1 cut(s)	1082
BstV1I	GCAGC	2 cut(s)	486, 587
BstV2I	GAAGAC	2 cut(s)	90, 1131
BsuRI	GGCC	1 cut(s)	1144
BtsCI	GGATG	5 cut(s)	153, 279, 538, 640, 910
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	465, 518
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	952
CfoI	GCGC	1 cut(s)	1084
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	2 cut(s)	58, 1143
Csp6I	GTAC	3 cut(s)	226, 287, 701
CviAII	CATG	4 cut(s)	229, 314, 779, 953
CviQI	GTAC	3 cut(s)	226, 287, 701
DdeI	CTNAG	3 cut(s)	222, 673, 824
DpnI	GATC	2 cut(s)	507, 927
DpnII	GATC	2 cut(s)	505, 925
DraI	TTTAAA	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	407, 813
EarI	CTCTTC	2 cut(s)	407, 813
Eco130I	CCWWGG	2 cut(s)	608, 1089
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	1143
EcoRII	CCWGG	5 cut(s)	54, 156, 758, 965, 1139
EcoRV	GATATC	1 cut(s)	982
EcoT14I	CCWWGG	2 cut(s)	608, 1089
ErhI	CCWWGG	2 cut(s)	608, 1089
FaeI	CATG	4 cut(s)	232, 317, 782, 956
FaqI	GGGAC	2 cut(s)	839, 1168
FatI	CATG	4 cut(s)	228, 313, 778, 952
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	241, 500, 576
FokI	GGATG	5 cut(s)	140, 286, 545, 647, 917
Fsp4HI	GCNGC	3 cut(s)	241, 500, 576
FspBI	CTAG	5 cut(s)	125, 309, 555, 582, 840
GlaI	GCGC	1 cut(s)	1083
GluI	GCNGC	3 cut(s)	241, 500, 576
HaeIII	GGCC	1 cut(s)	1144
HapII	CCGG	3 cut(s)	478, 857, 1163
HhaI	GCGC	1 cut(s)	1084
Hin1II	CATG	4 cut(s)	232, 317, 782, 956
Hin6I	GCGC	1 cut(s)	1082
HinP1I	GCGC	1 cut(s)	1082
HincII	GTYRAC	2 cut(s)	343, 560
HindII	GTYRAC	2 cut(s)	343, 560
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	168, 993
HpaII	CCGG	3 cut(s)	478, 857, 1163
HphI	GGTGA	3 cut(s)	809, 923, 932
Hpy166II	GTNNAC	4 cut(s)	343, 382, 560, 587
Hpy188I	TCNGA	2 cut(s)	676, 1018
Hpy188III	TCNNGA	3 cut(s)	280, 929, 953
Hpy8I	GTNNAC	4 cut(s)	343, 382, 560, 587
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	7 cut(s)	176, 226, 254, 264, 277, 334, 1095
HpyCH4III	ACNGT	3 cut(s)	494, 631, 700
HpyCH4IV	ACGT	2 cut(s)	947, 1128
HpyCH4V	TGCA	2 cut(s)	365, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	508, 517, 648, 770, 836
HpyF3I	CTNAG	3 cut(s)	222, 673, 824
HpySE526I	ACGT	2 cut(s)	947, 1128
Hsp92II	CATG	4 cut(s)	232, 317, 782, 956
HspAI	GCGC	1 cut(s)	1082
KpnI	GGTACC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	505, 925
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	1 cut(s)	1114
Lsp1109I	GCAGC	2 cut(s)	486, 587
LweI	GCATC	3 cut(s)	452, 490, 551
MaeI	CTAG	5 cut(s)	125, 309, 555, 582, 840
MaeII	ACGT	2 cut(s)	947, 1128
MaeIII	GTNAC	6 cut(s)	127, 431, 694, 754, 832, 929
MalI	GATC	2 cut(s)	507, 927
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	2 cut(s)	505, 925
MboII	GAAGA	5 cut(s)	95, 191, 424, 830, 1136
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	5 cut(s)	200, 397, 663, 1007, 1113
MlyI	GAGTC	2 cut(s)	177, 1002
MseI	TTAA	4 cut(s)	47, 108, 666, 1023
MspA1I	CMGCKG	1 cut(s)	499
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	3 cut(s)	478, 857, 1163
MspR9I	CCNGG	6 cut(s)	56, 158, 760, 857, 967, 1141
MvaI	CCWGG	5 cut(s)	56, 158, 760, 967, 1141
MvnI	CGCG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	5 cut(s)	508, 517, 648, 770, 836
NciI	CCSGG	1 cut(s)	857
NdeII	GATC	2 cut(s)	505, 925
NlaIII	CATG	4 cut(s)	232, 317, 782, 956
NlaIV	GGNNCC	3 cut(s)	288, 476, 765
NmuCI	GTSAC	5 cut(s)	127, 431, 754, 832, 929
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	952
PciI	ACATGT	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PfoI	TCCNGGA	2 cut(s)	54, 855
PkrI	GCNGC	3 cut(s)	242, 501, 577
PleI	GAGTC	2 cut(s)	176, 1001
PpsI	GAGTC	2 cut(s)	176, 1001
PscI	ACATGT	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	1023
Psp6I	CCWGG	5 cut(s)	54, 156, 758, 965, 1139
PspGI	CCWGG	5 cut(s)	54, 156, 758, 965, 1139
PspN4I	GGNNCC	3 cut(s)	288, 476, 765
PspPI	GGNCC	2 cut(s)	58, 1143
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	3 cut(s)	227, 288, 702
RsaNI	GTAC	3 cut(s)	226, 287, 701
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	4 cut(s)	47, 108, 666, 1023
SatI	GCNGC	3 cut(s)	241, 500, 576
Sau3AI	GATC	2 cut(s)	505, 925
Sau96I	GGNCC	2 cut(s)	58, 1143
SchI	GAGTC	2 cut(s)	177, 1002
ScrFI	CCNGG	6 cut(s)	56, 158, 760, 857, 967, 1141
SduI	GDGCHC	1 cut(s)	766
SfaNI	GCATC	3 cut(s)	452, 490, 551
SfcI	CTRYAG	3 cut(s)	385, 490, 617
SinI	GGWCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	5 cut(s)	200, 397, 663, 1007, 1113
SsiI	CCGC	2 cut(s)	240, 642
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	5 cut(s)	125, 309, 555, 582, 840
StyD4I	CCNGG	6 cut(s)	54, 156, 758, 855, 965, 1139
StyI	CCWWGG	2 cut(s)	608, 1089
TaaI	ACNGT	3 cut(s)	494, 631, 700
TaiI	ACGT	2 cut(s)	950, 1131
TaqI	TCGA	2 cut(s)	279, 300
TasI	AATT	5 cut(s)	200, 397, 663, 1007, 1113
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	243
Tru1I	TTAA	4 cut(s)	47, 108, 666, 1023
Tru9I	TTAA	4 cut(s)	47, 108, 666, 1023
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	5 cut(s)	127, 431, 754, 832, 929
TseI	GCWGC	2 cut(s)	499, 575
Tsp45I	GTSAC	5 cut(s)	127, 431, 754, 832, 929
TspDTI	ATGAA	5 cut(s)	85, 192, 245, 410, 941
TspGWI	ACGGA	2 cut(s)	545, 718
TspRI	CASTG	1 cut(s)	837
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	1023
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	5 cut(s)	125, 309, 555, 582, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.