Rroxscaffold_5G00350490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001459
Physical Location & Seq
Reverse (-)
24570723 .. 24573746
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350490.1

Sequence Viewer

Length: 927 bp
ATGGATGTTGGTGTAAAGTTTCTATCTCTTTTTCCCTTGATGCTGTCTTGTTTGAGAGAGATTGGCTTCCCAAGATTTCGAGAACTTGGAAGGCTATATGAAAATCACTCTAAGTTAAATAACTCCATTATGTACTGGATACTGTACAATGATTTTTTCTGGTGTAAGCGGGAGGAACGAAAAAAGAAGAGTTTTCAGTTTTTGCACTATCTTGCAGCTATTAAAAATACTCCTCATGTAGATACTCCCCATGCCCCTTCTCCTCGTGCAAATACTCTTGGTGCAGATTTGCATGATGTGGATACTCCTCATGTAGATACTCCCCATCCCCATGTAGATACTCCCCATGCTCCTTCTCCTCGTGCAAATACTCTTGGTGCAGATCTGCATGATGCAGATACTCCTCAAGTAGATACTCCCCATGCTCCTTCTCCTCATGCAGATACTCATGATGCAAATCTGCATGATGAGATGGAGACAAATAGGTTGAATGGTGATGGTGATGGTGATGATGAGGATCAACTTAAACAGTCATATGGAGGCTTTTATGATGATGATGAGGAGGAGGAGGATGATGGCGATGGTGGTGGTGATCATGACATTTCGTTGCATACGTTTCATGATTACTTTGCCAGGCAGAATGATGATGGTCTGGATGATTCACCAGTCCATGAGGCGATCAACTCGCCAGTCGAGGAGTCAATCGATTTGGATTGTTCCCTAGTCGATAAGGCAGTCAATGAGCGAGTCATCTCTTGGAAATTACGCTTTGACATTAAGGCTAGAGATTGGAACACCTCCACCAAGAAGCCTCCTGTGAAAAGGGATAAATATGCGCCTTCCTTGGCTCTCAAAAAAGTTGCTCCAATTTTGCCTGATGACAGAGTGAAATATGGGACTGAACCGGAAAAAAAAAATGAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.98

Weight (kDa)

4.98

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 525
AfaI GTAC 2 cut(s) 134, 146
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 525
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 838
AsuHPI GGTGA 5 cut(s) 506, 512, 518, 602, 654
BauI CACGAG 2 cut(s) 264, 360
BbvI GCAGC 1 cut(s) 227
BccI CCATC 7 cut(s) 333, 466, 491, 497, 569, 575, 641
BciT130I CCWGG 1 cut(s) 634
BciVI GTATCC 2 cut(s) 132, 295
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 722, 783
BfuI GTATCC 2 cut(s) 132, 295
BglII AGATCT 1 cut(s) 382
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 3 cut(s) 30, 382, 442
BpuEI CTTGAG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 705
BsaBI GATNNNNATC 2 cut(s) 456, 516
BsaJI CCNNGG 1 cut(s) 843
BsaWI WCCGGW 1 cut(s) 904
Bse1I ACTGG 3 cut(s) 140, 665, 689
Bse8I GATNNNNATC 2 cut(s) 456, 516
BseBI CCWGG 1 cut(s) 634
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 843
BseGI GGATG 4 cut(s) 10, 325, 577, 661
BseJI GATNNNNATC 2 cut(s) 456, 516
BseNI ACTGG 3 cut(s) 140, 665, 689
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 2 cut(s) 303, 399
BshVI ATCGAT 1 cut(s) 705
BsiSI CCGG 1 cut(s) 905
BslFI GGGAC 1 cut(s) 910
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 910
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 4 cut(s) 382, 517, 592, 678
BspACI CCGC 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 705
BspHI TCATGA 3 cut(s) 448, 595, 619
BspPI GGATC 1 cut(s) 525
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 3 cut(s) 140, 665, 689
BssECI CCNNGG 1 cut(s) 843
BssMI GATC 4 cut(s) 382, 517, 592, 678
BssSI CACGAG 2 cut(s) 264, 360
BssT1I CCWWGG 1 cut(s) 843
Bst2BI CACGAG 2 cut(s) 264, 360
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 2 cut(s) 144, 531
Bst6I CTCTTC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 111, 924
BstF5I GGATG 4 cut(s) 10, 325, 577, 661
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 4 cut(s) 385, 520, 595, 681
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 382, 517, 592, 678
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 705
BsuI GTATCC 2 cut(s) 132, 295
BsuTUI ATCGAT 1 cut(s) 705
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 4 cut(s) 10, 325, 577, 661
CciI TCATGA 3 cut(s) 448, 595, 619
CfoI GCGC 1 cut(s) 838
ClaI ATCGAT 1 cut(s) 705
Csp6I GTAC 2 cut(s) 133, 145
CviJI RGCY 7 cut(s) 66, 94, 218, 543, 782, 811, 848
CviKI_1 RGCY 7 cut(s) 66, 94, 218, 543, 782, 811, 848
CviQI GTAC 2 cut(s) 133, 145
DdeI CTNAG 2 cut(s) 111, 924
DpnI GATC 4 cut(s) 384, 519, 594, 680
DpnII GATC 4 cut(s) 382, 517, 592, 678
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 843
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 843
FaqI GGGAC 1 cut(s) 910
FauI CCCGC 1 cut(s) 162
FauNDI CATATG 1 cut(s) 535
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 4 cut(s) 17, 312, 584, 668
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 722, 783
GlaI GCGC 1 cut(s) 837
GluI GCNGC 1 cut(s) 216
HapII CCGG 1 cut(s) 905
HhaI GCGC 1 cut(s) 838
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HinfI GANTC 3 cut(s) 659, 698, 747
HpaII CCGG 1 cut(s) 905
HphI GGTGA 5 cut(s) 506, 512, 518, 602, 654
Hpy188III TCNNGA 5 cut(s) 80, 449, 596, 620, 653
HpyAV CCTTC 5 cut(s) 84, 267, 363, 438, 849
HpyCH4III ACNGT 2 cut(s) 144, 531
HpyCH4IV ACGT 1 cut(s) 614
HpyF3I CTNAG 2 cut(s) 111, 924
HpySE526I ACGT 1 cut(s) 614
HspAI GCGC 1 cut(s) 836
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 4 cut(s) 382, 517, 592, 678
LmnI GCTCC 3 cut(s) 355, 430, 868
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 3 cut(s) 30, 382, 442
MaeI CTAG 2 cut(s) 722, 783
MaeII ACGT 1 cut(s) 614
MalI GATC 4 cut(s) 384, 519, 594, 680
MboI GATC 4 cut(s) 382, 517, 592, 678
MboII GAAGA 1 cut(s) 199
MflI RGATCY 1 cut(s) 382
MluCI AATT 2 cut(s) 761, 867
MlyI GAGTC 2 cut(s) 707, 756
MseI TTAA 4 cut(s) 116, 222, 525, 777
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 905
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
NdeI CATATG 1 cut(s) 535
NdeII GATC 4 cut(s) 382, 517, 592, 678
PagI TCATGA 3 cut(s) 448, 595, 619
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PfeI GAWTC 1 cut(s) 659
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 706, 755
PpsI GAGTC 2 cut(s) 706, 755
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 134, 146
RsaNI GTAC 2 cut(s) 133, 145
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 4 cut(s) 116, 222, 525, 777
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 4 cut(s) 382, 517, 592, 678
SchI GAGTC 2 cut(s) 707, 756
ScrFI CCNGG 1 cut(s) 634
SetI ASST 4 cut(s) 220, 488, 617, 800
SfaNI GCATC 3 cut(s) 30, 382, 442
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 2 cut(s) 761, 867
SsiI CCGC 1 cut(s) 169
SspMI CTAG 2 cut(s) 722, 783
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 2 cut(s) 144, 531
TaiI ACGT 1 cut(s) 617
TaqI TCGA 4 cut(s) 79, 693, 705, 726
TasI AATT 2 cut(s) 761, 867
TatI WGTACW 2 cut(s) 132, 144
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 4 cut(s) 116, 222, 525, 777
Tru9I TTAA 4 cut(s) 116, 222, 525, 777
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 114, 608
XspI CTAG 2 cut(s) 722, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.