Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001459

Physical Location & Seq

Genomic Coordinates Reverse (-)

37845129 .. 37845777

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG329800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACCCAGAGAACAACCAGTCCATTATCATACAAGGGTTGGGGCATCGACTTGGTAACATGTGAGTCTGTGAAGCTTGAAAGGTTACAAAAGGCTTTCCAAACTATATCCAATGATGTAGAGGTAAACAACAATAGATTTGATGAATATGTTAAAGCCTTTGTCCTCTATGTCATAGGGACGATACTATTACAGACCATAGAGCATGAAACAACGACTTTAAGCTATTTGGAGGATTTGTCAGACATTGGGGAAATAAGGAACCTTGCATGGGAAATTGAGTTGCTTGCACACTTGCACTATTGTTTGGGTAAACATGACAAAAAGAAGGAGGTAATAGAAGGCCACTTGTATTTTTTGATGGTTTGGGCACTGGAGCATCTCACTACATTTAGAAAGGAACTATTCAGGCCCGATGATGTTGAGAGACCTTTGGGTTTCCCTCTATCTATAGGCTGGGCAACATCAATTTCCGCAATGCTTAGCAACAAGAACAAGGAGGAGAAGTACCACGAGCTCATGGGTGAACTTTGGGATGATGCAGACAATGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

185

Amino Acids

21.52

Weight (kDa)

5.06

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	28 - 161	1.2e-10	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02840 FvH4_4g28291 FvH4_4g28291 FvH4_5g29581
malus_domestica	MD10G1009900.v1.1 MD13G1054400.v1.1
prunus_persica	Prupe.8G013700_v2.0.a1 Prupe.8G013700_v2.0.a1 Prupe.8G013900_v2.0.a1 Prupe.8G014000_v2.0.a1
pyrus_communis	pycom10g00610 pycom13g04830 pycom14g08210
rosa_laevigata	RLG00000013271
rosa_multiflora	Rmu_co8191550.1_g000001 Rmu_co8290979.1_g000001 Rmu_sc0000056.1_g000004 Rmu_sc0000834.1_g000019 Rmu_sc0004145.1_g000004 Rmu_sc0004145.1_g000014 Rmu_sc0008004.1_g000008 Rmu_sc0009291.1_g000008 Rmu_sc0042239.1_g000001 Rmu_ssc0000189.1_g000023 Rmu_ssc0000255.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350480 Rroxscaffold_5G00350490
rosa_rugosa	Rorug01G0106300 Rorug01G0106300 Rorug01G0106400 Rorug01G0210200
rosa_samantha	Rh1AG123300 Rh1AG225300 Rh1BG097100 Rh1BG098700 Rh1BG193200 Rh1CG210100 Rh1DG128500 Rh1DG221500 Rh2AG598100 Rh2AG598200 Rh5BG336600 Rh6AG174000 Rh7AG329800 Rh7AG336300 Rh7AG336400 Rh7CG354000 Rh7CG354100 Rh7DG332600
rosa_wichuraiana	Rw0G011920 Rw1G019370 Rw6G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	80
AloI	GAACNNNNNNTCC	1 cut(s)	36
AluBI	AGCT	3 cut(s)	76, 225, 517
AluI	AGCT	3 cut(s)	76, 225, 517
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	421
AoxI	GGCC	2 cut(s)	343, 410
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	450
BlpI	GCTNAGC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	3 cut(s)	54, 388, 529
BpmI	CTGGAG	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	421
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	18, 378
Bse3DI	GCAATG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	18, 378
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	456
BshFI	GGCC	2 cut(s)	345, 412
BsiHKAI	GWGCWC	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	345, 412
Bso31I	GGTCTC	1 cut(s)	421
Bsp1286I	GDGCHC	2 cut(s)	373, 519
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	2 cut(s)	345, 412
BspLI	GGNNCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	18, 378
BssSI	CACGAG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	541
BstMAI	GTCTC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	345, 412
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	5 cut(s)	60, 206, 270, 317, 520
CviJI	RGCY	8 cut(s)	76, 95, 158, 225, 345, 412, 456, 517
CviKI_1	RGCY	8 cut(s)	76, 95, 158, 225, 345, 412, 456, 517
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	5 cut(s)	63, 209, 273, 320, 523
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	5 cut(s)	59, 205, 269, 316, 519
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	519
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	345, 412
Hin1II	CATG	5 cut(s)	63, 209, 273, 320, 523
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	3 cut(s)	127, 314, 527
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	127, 314, 527
HpyAV	CCTTC	2 cut(s)	322, 335
HpyCH4V	TGCA	4 cut(s)	269, 290, 298, 542
HpyF3I	CTNAG	1 cut(s)	482
Hsp92II	CATG	5 cut(s)	63, 209, 273, 320, 523
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	5 cut(s)	20, 31, 359, 394, 442
LweI	GCATC	3 cut(s)	54, 388, 529
MaeIII	GTNAC	2 cut(s)	55, 84
MhlI	GDGCHC	2 cut(s)	373, 519
MluCI	AATT	2 cut(s)	276, 468
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	115, 176, 226, 325, 453, 493
MseI	TTAA	2 cut(s)	153, 221
NlaIII	CATG	5 cut(s)	63, 209, 273, 320, 523
NlaIV	GGNNCC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	63
PciI	ACATGT	1 cut(s)	59
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	411
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	153, 221
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	373, 519
SetI	ASST	8 cut(s)	78, 86, 126, 227, 267, 336, 433, 519
SfaNI	GCATC	3 cut(s)	54, 388, 529
SfcI	CTRYAG	1 cut(s)	450
Sse9I	AATT	2 cut(s)	276, 468
SsiI	CCGC	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	519
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	276, 468
Tru1I	TTAA	2 cut(s)	153, 221
Tru9I	TTAA	2 cut(s)	153, 221
TscAI	CASTG	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	159, 222
TspRI	CASTG	1 cut(s)	378
XceI	RCATGY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.