Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

29201180 .. 29201716

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACCAATGCCAAATTAAGGTTTTGGCCTTTGTCAATTGCCACCGGTGACAAAACCGGGAGGTTATTGCAATATGACCCTTGTACAAAGAAGGTGACTGTGTTGCTCGATAAGTTGGCCTTTGCAAATGGTGTGGCTCTAAGCAAGGACAGTTCTTTCCTCCTAGTAGCCGAATCTGCGACATCCAAAATCTTCAAGCTTTGGCTTCGAGGACCCAATGCCGGTGATGTAGAACTCTTTACTCAACTGAAAAGGCCAGCCGATAACATTAAGAGAACCGACAATGGTGAATTTTGGGTTGCACTAAATAGTCGAAGAGCATTACAGGGAAACCAGACTTCTTCAGCATTTTGGTTGACGAAAGATCCGGTGGGAGTGAAGTTTGATGAGCAAGGAAACATTGTGAAAGTTTTGGATGGAGAGGGTGGTCCGACGCTGGAGTCTGTGAGTGAGGTTGAAGAACACAATGGAAAGTTGTGGATTGGATCAGTAGTGAAGCCCTATGTCGGTGTGTTGCGACTTGTTAGTACATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

179

Amino Acids

19.56

Weight (kDa)

9.21

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	12 - 71	1.5e-19	Strictosidine synthase
SGL	PF08450	15 - 106	1.6e-08	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	535
AasI	GACNNNNNNGTC	1 cut(s)	439
AclWI	GGATC	2 cut(s)	359, 493
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	85, 529
AfiI	CCNNNNNNNGG	3 cut(s)	18, 221, 506
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	196, 458
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AlwI	GGATC	2 cut(s)	359, 493
AoxI	GGCC	3 cut(s)	26, 117, 254
ApoI	RAATTY	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	212, 428
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	4 cut(s)	59, 106, 236, 299
AvaII	GGWCC	2 cut(s)	212, 428
BccI	CCATC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	212, 428
BmgT120I	GGNCC	2 cut(s)	212, 428
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	58
BsaWI	WCCGGW	2 cut(s)	44, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 221, 506
Bse118I	RCCGGY	2 cut(s)	44, 221
BseGI	GGATG	2 cut(s)	182, 421
BseLI	CCNNNNNNNGG	3 cut(s)	18, 221, 506
BshFI	GGCC	3 cut(s)	28, 119, 256
BshTI	ACCGGT	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	45, 57, 222, 368
BslI	CCNNNNNNNGG	3 cut(s)	18, 221, 506
BsnI	GGCC	3 cut(s)	28, 119, 256
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	364, 485
BspANI	GGCC	3 cut(s)	28, 119, 256
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	359, 493
BspQI	GCTCTTC	1 cut(s)	310
BsrFI	RCCGGY	2 cut(s)	44, 221
BsrGI	TGTACA	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	44, 221
BssMI	GATC	2 cut(s)	364, 485
Bst4CI	ACNGT	2 cut(s)	100, 152
Bst6I	CTCTTC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	182, 421
BstKTI	GATC	2 cut(s)	367, 488
BstMBI	GATC	2 cut(s)	364, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	28, 119, 256
BtsCI	GGATG	2 cut(s)	182, 421
Cac8I	GCNNGC	1 cut(s)	258
Cfr10I	RCCGGY	2 cut(s)	44, 221
Cfr13I	GGNCC	2 cut(s)	212, 428
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	84, 528
CspAI	ACCGGT	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviJI	RGCY	9 cut(s)	28, 119, 137, 170, 199, 205, 256, 260, 499
CviKI_1	RGCY	9 cut(s)	28, 119, 137, 170, 199, 205, 256, 260, 499
CviQI	GTAC	2 cut(s)	84, 528
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	366, 487
DpnII	GATC	2 cut(s)	364, 485
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	212, 428
Eco57I	CTGAAG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	212
FaiI	YATR	3 cut(s)	75, 504, 535
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FokI	GGATG	2 cut(s)	169, 428
FspBI	CTAG	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	28, 119, 256
HapII	CCGG	4 cut(s)	45, 57, 222, 368
HgaI	GACGC	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	173, 440
HpaII	CCGG	4 cut(s)	45, 57, 222, 368
HphI	GGTGA	4 cut(s)	59, 106, 236, 299
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	1 cut(s)	432
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	100, 152
HpyCH4V	TGCA	3 cut(s)	70, 125, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	364, 485
LguI	GCTCTTC	1 cut(s)	310
LpnPI	CCDG	8 cut(s)	58, 70, 235, 270, 311, 347, 381, 422
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	47, 94
MalI	GATC	2 cut(s)	366, 487
MboI	GATC	2 cut(s)	364, 485
MboII	GAAGA	4 cut(s)	184, 327, 333, 470
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	3 cut(s)	14, 36, 290
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	5 cut(s)	54, 170, 203, 415, 445
MseI	TTAA	2 cut(s)	17, 270
MspI	CCGG	4 cut(s)	45, 57, 222, 368
MspR9I	CCNGG	1 cut(s)	58
MunI	CAATTG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	364, 485
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	47, 94
PciSI	GCTCTTC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	44
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	212, 428
PspPPI	RGGWCCY	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	85, 529
RsaNI	GTAC	2 cut(s)	84, 528
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	17, 270
Sau3AI	GATC	2 cut(s)	364, 485
Sau96I	GGNCC	2 cut(s)	212, 428
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	5 cut(s)	23, 65, 96, 201, 456
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	212, 428
Sse9I	AATT	3 cut(s)	14, 36, 290
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	100, 152
TaqI	TCGA	3 cut(s)	108, 208, 313
TasI	AATT	3 cut(s)	14, 36, 290
TatI	WGTACW	2 cut(s)	83, 527
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	17, 270
Tru9I	TTAA	2 cut(s)	17, 270
TseFI	GTSAC	2 cut(s)	47, 94
Tsp45I	GTSAC	2 cut(s)	47, 94
VpaK11BI	GGWCC	2 cut(s)	212, 428
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.