Rroxscaffold_5G00377790

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000674
Physical Location & Seq
Reverse (-)
58395713 .. 58397535
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377790.1

Sequence Viewer

Length: 840 bp
ATGGCAAGGGCCTTGCCGGGGCTGGACGGAGTTTGCCTTTACCTCCCCAACCAGGCAAGCTATCTGCCAAGGAAAATATGTGATGGTTCAACCGATAATACGACTGAACCAATATGTGGAAGGCCACTAGGTTTGAAGTTCAACCCAAAAACTTGTGAACTCTATATAGCAGATGCCTACTTCGGGCTTTTAAAGATAGGTCGCAATGGTGGTCGTCCTCAACAACTTGCCACTTCCCTAAATGGAGTCCCTTTCCGTTTTCTGAATGCTCTGGACATTGATAGTCAAAGTGGAATCGTTTATTTTACAGACACCAGCACAGTTTACCAAAGAAGGTTGTGGCCTTTGTCAATTGCCACCGGTGACAAAACCGGAAGGTTATTGCAATACGACCCTTGTACAAAGAAGGTGATTGCGTTGCTCGATAACTTGGCTTTTGCAAATGGTGTGGCTCTAAGCAAGGACAGTTCTTTCCTCCTAGTAGCCGAATCCGCCACATTCAAAATCTTAAAGCTTTGGCTTCGAGGACCCAAAGCTCATGACGTAAAACTCTTCACTCAACTGAAAAGGCCAGCCGATAACATTAAGAGGACCAACAGTGGTGAATTTTGGGCTGCACTCAATAGTCTAAGAGGATTACAGGGTAACCAGACTTCTCCATCCTTGTGGTTGACGAAAGATCCGGTGGGAGTGAAGTTTGATGAACAAGGAAACGTAATGGAGGTGTTAGATGGAGAGGGTGGTCCGACGCTTGAGTCCATTAGTGAGGTTGAAGAACACAACGGAAAGTTGTGGATTGGATCGGTAGTAAAGTCCTATGTTGGAGTTATCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

279

Amino Acids

30.55

Weight (kDa)

8.87

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Str_synth PF03088 89 - 176 1.8e-27 Strictosidine synthase
SGL PF08450 120 - 209 7.4e-07 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 1 cut(s) 492
AclWI GGATC 2 cut(s) 674, 808
AcsI RAATTY 1 cut(s) 605
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 4 cut(s) 18, 52, 116, 183
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 5 cut(s) 90, 136, 142, 502, 773
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 60, 514, 536
AluI AGCT 3 cut(s) 60, 514, 536
AlwI GGATC 2 cut(s) 674, 808
AoxI GGCC 4 cut(s) 9, 122, 341, 569
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 1 cut(s) 605
AsiGI ACCGGT 1 cut(s) 359
AspS9I GGNCC 4 cut(s) 9, 527, 591, 743
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 3 cut(s) 374, 421, 614
AvaII GGWCC 3 cut(s) 527, 591, 743
BarI GAAGNNNNNNTAC 2 cut(s) 637, 669
BbvI GCAGC 1 cut(s) 601
BccI CCATC 3 cut(s) 77, 667, 725
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 18
BfaI CTAG 2 cut(s) 128, 479
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
Bme1390I CCNGG 2 cut(s) 18, 53
Bme18I GGWCC 3 cut(s) 527, 591, 743
BmgT120I GGNCC 4 cut(s) 9, 527, 591, 743
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 18, 53
BmsI GCATC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 773
BpuMI CCSGG 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 17, 68
BsaWI WCCGGW 3 cut(s) 359, 371, 682
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 52, 116, 183
Bse118I RCCGGY 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 17, 68
BseGI GGATG 1 cut(s) 659
BseLI CCNNNNNNNGG 4 cut(s) 18, 52, 116, 183
BseMI GCAATG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 601
BsgI GTGCAG 1 cut(s) 600
BshFI GGCC 4 cut(s) 11, 124, 343, 571
BshTI ACCGGT 1 cut(s) 359
BsiSI CCGG 4 cut(s) 17, 360, 372, 683
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 4 cut(s) 18, 52, 116, 183
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 4 cut(s) 11, 124, 343, 571
Bsp1407I TGTACA 1 cut(s) 398
Bsp143I GATC 2 cut(s) 679, 800
BspACI CCGC 1 cut(s) 492
BspANI GGCC 4 cut(s) 11, 124, 343, 571
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 2 cut(s) 674, 808
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 17, 68
BssMI GATC 2 cut(s) 679, 800
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 322, 467, 599
Bst6I CTCTTC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 58, 573
BstDEI CTNAG 2 cut(s) 455, 629
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 1 cut(s) 659
BstKTI GATC 2 cut(s) 682, 803
BstMBI GATC 2 cut(s) 679, 800
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 53
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 16, 51
BstV1I GCAGC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 4 cut(s) 11, 124, 343, 571
BtsCI GGATG 1 cut(s) 659
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 2 cut(s) 58, 573
CciI TCATGA 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 4 cut(s) 9, 527, 591, 743
CseI GACGC 1 cut(s) 757
Csp6I GTAC 1 cut(s) 399
CspAI ACCGGT 1 cut(s) 359
CspCI CAANNNNNGTGG 4 cut(s) 114, 149, 429, 464
CviAII CATG 1 cut(s) 539
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 2 cut(s) 455, 629
DpnI GATC 2 cut(s) 681, 802
DpnII GATC 2 cut(s) 679, 800
DraI TTTAAA 1 cut(s) 192
DrdI GACNNNNNNGTC 1 cut(s) 754
DseDI GACNNNNNNGTC 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 68
Eco47I GGWCC 3 cut(s) 527, 591, 743
Eco91I GGTNACC 1 cut(s) 644
EcoO109I RGGNCCY 2 cut(s) 9, 527
EcoO65I GGTNACC 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 542
FaiI YATR 7 cut(s) 79, 115, 165, 167, 540, 819, 838
FaqI GGGAC 1 cut(s) 233
FatI CATG 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 2 cut(s) 128, 479
GluI GCNGC 1 cut(s) 615
HaeIII GGCC 4 cut(s) 11, 124, 343, 571
HapII CCGG 4 cut(s) 17, 360, 372, 683
HgaI GACGC 1 cut(s) 757
Hin1II CATG 1 cut(s) 542
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 4 cut(s) 246, 294, 488, 755
HpaII CCGG 4 cut(s) 17, 360, 372, 683
HphI GGTGA 3 cut(s) 374, 421, 614
Hpy166II GTNNAC 3 cut(s) 158, 325, 672
Hpy188I TCNGA 2 cut(s) 264, 747
Hpy188III TCNNGA 2 cut(s) 272, 539
Hpy8I GTNNAC 3 cut(s) 158, 325, 672
Hpy99I CGWCG 1 cut(s) 751
HpyAV CCTTC 4 cut(s) 114, 327, 369, 400
HpyCH4III ACNGT 3 cut(s) 322, 467, 599
HpyCH4IV ACGT 2 cut(s) 543, 714
HpyCH4V TGCA 3 cut(s) 385, 440, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 455, 629
HpySE526I ACGT 2 cut(s) 543, 714
Hsp92II CATG 1 cut(s) 542
Kzo9I GATC 2 cut(s) 679, 800
Lsp1109I GCAGC 1 cut(s) 601
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 128, 479
MaeII ACGT 2 cut(s) 543, 714
MaeIII GTNAC 2 cut(s) 362, 644
MalI GATC 2 cut(s) 681, 802
MboI GATC 2 cut(s) 679, 800
MboII GAAGA 2 cut(s) 544, 785
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 679
MluCI AATT 2 cut(s) 351, 605
MlyI GAGTC 2 cut(s) 255, 764
MmeI TCCRAC 2 cut(s) 770, 802
MnlI CCTC 9 cut(s) 53, 228, 485, 518, 582, 626, 715, 730, 760
MseI TTAA 3 cut(s) 191, 509, 585
MslI CAYNNNNRTG 1 cut(s) 664
MspI CCGG 4 cut(s) 17, 360, 372, 683
MspR9I CCNGG 2 cut(s) 18, 53
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 491
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 679, 800
NlaIII CATG 1 cut(s) 542
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 362
PagI TCATGA 1 cut(s) 538
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 294, 488
PflMI CCANNNNNTGG 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 1 cut(s) 616
PleI GAGTC 2 cut(s) 254, 763
PpsI GAGTC 2 cut(s) 254, 763
PpuMI RGGWCCY 1 cut(s) 527
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 4 cut(s) 9, 527, 591, 743
PspPPI RGGWCCY 1 cut(s) 527
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 664
SaqAI TTAA 3 cut(s) 191, 509, 585
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 2 cut(s) 679, 800
Sau96I GGNCC 4 cut(s) 9, 527, 591, 743
SchI GAGTC 2 cut(s) 255, 764
ScrFI CCNGG 2 cut(s) 18, 53
SfaNI GCATC 1 cut(s) 163
SgrAI CRCCGGYG 1 cut(s) 359
SinI GGWCC 3 cut(s) 527, 591, 743
SmiMI CAYNNNNRTG 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 2 cut(s) 351, 605
SsiI CCGC 1 cut(s) 492
SspMI CTAG 2 cut(s) 128, 479
StyD4I CCNGG 2 cut(s) 16, 51
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 3 cut(s) 322, 467, 599
TaiI ACGT 2 cut(s) 546, 717
TaqI TCGA 2 cut(s) 423, 523
TasI AATT 2 cut(s) 351, 605
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 2 cut(s) 294, 488
Tru1I TTAA 3 cut(s) 191, 509, 585
Tru9I TTAA 3 cut(s) 191, 509, 585
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 717
TspGWI ACGGA 3 cut(s) 42, 245, 798
TspRI CASTG 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 3 cut(s) 527, 591, 743
XapI RAATTY 1 cut(s) 605
XspI CTAG 2 cut(s) 128, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.