Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007889.1

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

32913 .. 33362

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007889.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgcaatacgaccctagtacaaagaacgtgactgtgttgctcaagggattggcatttccaaatggtgtggctctaactaaggataaatctttcctcctcctagccgaaactggcacgctgaaaatcctcaggttgtggcttcgaggacccaaatctaatgccttggaactttttgctcaactagtcgggctcccagataacatcaagagaaacaacaatggagaattctgggttgcgatcaacaacggaagaggaagatcaatatctcggactctgctaggagatcctgtaggagcaaagtttgatgaagaaggaaacgttttggaggtgttagatggagaggatagtacggcagcgttgcttcagtctgttagtgaagttgaagaacacaacggaaagttgtggataggatcggtggaaaattcatatgttggtgttggctcgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

149

Amino Acids

16.17

Weight (kDa)

5.2

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	2 cut(s)	278, 418
AcsI	RAATTY	2 cut(s)	224, 421
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	19, 349
AgsI	TTSAA	1 cut(s)	383
AhlI	ACTAGT	1 cut(s)	181
AlwI	GGATC	2 cut(s)	278, 418
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	224, 421
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	366
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	4 cut(s)	15, 101, 182, 278
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	148, 191
BpuEI	CTTGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse1I	ACTGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	237, 257, 283, 410
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	148, 191
BspPI	GGATC	2 cut(s)	278, 418
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	237, 257, 283, 410
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	78, 128
BstKTI	GATC	4 cut(s)	240, 260, 286, 413
BstMBI	GATC	4 cut(s)	237, 257, 283, 410
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	18, 348
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviJI	RGCY	5 cut(s)	71, 104, 139, 190, 441
CviKI_1	RGCY	5 cut(s)	71, 104, 139, 190, 441
CviQI	GTAC	2 cut(s)	18, 348
DdeI	CTNAG	2 cut(s)	78, 128
DpnI	GATC	4 cut(s)	239, 259, 285, 412
DpnII	GATC	4 cut(s)	237, 257, 283, 410
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	162
FaiI	YATR	2 cut(s)	427, 429
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	4 cut(s)	15, 101, 182, 278
GluI	GCNGC	1 cut(s)	354
HinfI	GANTC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	27, 318
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	78, 128
HpySE526I	ACGT	2 cut(s)	27, 318
Kzo9I	GATC	4 cut(s)	237, 257, 283, 410
LmnI	GCTCC	2 cut(s)	195, 293
LpnPI	CCDG	5 cut(s)	96, 115, 207, 214, 300
Lsp1109I	GCAGC	1 cut(s)	365
MaeI	CTAG	4 cut(s)	15, 101, 182, 278
MaeII	ACGT	2 cut(s)	27, 318
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	4 cut(s)	239, 259, 285, 412
MboI	GATC	4 cut(s)	237, 257, 283, 410
MboII	GAAGA	4 cut(s)	261, 267, 320, 395
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	224, 421
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	104, 107, 137, 137, 245, 319, 334
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	237, 257, 283, 410
NlaIV	GGNNCC	2 cut(s)	148, 191
NmuCI	GTSAC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	146
Psp1406I	AACGTT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	148, 191
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	19, 349
RsaNI	GTAC	2 cut(s)	18, 348
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	4 cut(s)	237, 257, 283, 410
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	4 cut(s)	30, 134, 321, 330
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	2 cut(s)	224, 421
SspMI	CTAG	4 cut(s)	15, 101, 182, 278
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	30, 321
TaqI	TCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	224, 421
TatI	WGTACW	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	321, 414
TspGWI	ACGGA	2 cut(s)	261, 408
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	224, 421
XspI	CTAG	4 cut(s)	15, 101, 182, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.