RLG00000006502

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000674
Physical Location & Seq
Forward (+)
7747942 .. 7751195
3254 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006502

Sequence Viewer

Length: 636 bp
ATGCTCTGGACATTGATAGTCAAACTGGAATTGTTTATTTTACAGACACCAGCACAGTTTACCAAAGAAGGTTGTGGCCTTTGTCAATTGCCACCGGTGACAAAACCGGAAGCCGAATCCGCCACATTCAAAATCTTCAAGCTTTGTCTTCGAGGACCCAAAGCTCACGACGTACAACTCTTCACTCAACTGAAAAGGCCAGCCGATAACATTAAGAGAACCAACAGTGGTGAATTTTGGGCTGCACTCAATAGTCGAAGAGGGTTGCAGGGTAACCAGACTTCTCCATCCTTGTGGTTGACGAAAGATCCGGTGGGAGTGAAGTTTGATGAACAAGGAAACGTAATGGAGGTGTTAGATGGAGAGGGTGGTCGGACGCTTGAGTCCATTACTGAGATTGAAGAACACAACGGAAAGTTGTGGATTGGATCGGGCGGGACGCGGGAGATTAAAGTAACAATAAAAATTATATCACCTTTTCTCGTTTCTTCCCCTTTTTATTTTTCTCGTTTGCGGTCGAACAAACCTTGTTCCTCTCTTTTGCACGATCTCCACCCCTCAAAGAGGTTGTTCTGTGAAGCGAAAAGGCAGAGCTTGATTTGGAAGAAATGGGATATATTGGGGCACATGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

9.36

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 382
AccII CGCG 1 cut(s) 442
AciI CCGC 4 cut(s) 120, 435, 442, 514
AclWI GGATC 2 cut(s) 302, 436
AcsI RAATTY 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 564
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 130, 139, 401
AluBI AGCT 3 cut(s) 142, 164, 594
AluI AGCT 3 cut(s) 142, 164, 594
AlwI GGATC 2 cut(s) 302, 436
AoxI GGCC 2 cut(s) 76, 197
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 233
AsiGI ACCGGT 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 109, 242, 465
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 627
BarI GAAGNNNNNNTAC 2 cut(s) 265, 297
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 295, 353
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 401
BsaWI WCCGGW 3 cut(s) 94, 106, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 2 cut(s) 78, 199
BshTI ACCGGT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 518
BsiSI CCGG 3 cut(s) 95, 107, 311
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 2 cut(s) 78, 199
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 307, 428, 547
BspACI CCGC 4 cut(s) 120, 435, 442, 514
BspANI GGCC 2 cut(s) 78, 199
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 302, 436
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 3 cut(s) 307, 428, 547
Bst4CI ACNGT 2 cut(s) 57, 227
Bst6I CTCTTC 2 cut(s) 185, 253
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 393
BstEII GGTNACC 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 442
BstKTI GATC 3 cut(s) 310, 431, 550
BstMBI GATC 3 cut(s) 307, 428, 547
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 627
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 294
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 2 cut(s) 78, 199
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 2 cut(s) 385, 448
Csp6I GTAC 1 cut(s) 173
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 1 cut(s) 628
CviJI RGCY 8 cut(s) 78, 113, 142, 164, 199, 203, 242, 594
CviKI_1 RGCY 8 cut(s) 78, 113, 142, 164, 199, 203, 242, 594
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 393
DpnI GATC 3 cut(s) 309, 430, 549
DpnII GATC 3 cut(s) 307, 428, 547
DraIII CACNNNGTG 1 cut(s) 631
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 185, 253
EarI CTCTTC 2 cut(s) 185, 253
EciI GGCGGA 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 272
FaeI CATG 1 cut(s) 631
FaiI YATR 3 cut(s) 470, 617, 629
FaqI GGGAC 1 cut(s) 451
FatI CATG 1 cut(s) 627
FauI CCCGC 2 cut(s) 428, 435
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 78, 199
HapII CCGG 3 cut(s) 95, 107, 311
HgaI GACGC 2 cut(s) 385, 448
Hin1II CATG 1 cut(s) 631
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 116, 383
HpaII CCGG 3 cut(s) 95, 107, 311
HphI GGTGA 3 cut(s) 109, 242, 465
Hpy166II GTNNAC 2 cut(s) 60, 300
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 2 cut(s) 7, 167
Hpy8I GTNNAC 2 cut(s) 60, 300
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 57, 227
HpyCH4IV ACGT 2 cut(s) 171, 342
HpyCH4V TGCA 3 cut(s) 245, 268, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 171, 342
Hsp92II CATG 1 cut(s) 631
Kzo9I GATC 3 cut(s) 307, 428, 547
LpnPI CCDG 8 cut(s) 11, 63, 108, 120, 213, 254, 290, 324
Lsp1109I GCAGC 1 cut(s) 229
MaeII ACGT 2 cut(s) 171, 342
MaeIII GTNAC 3 cut(s) 97, 272, 454
MalI GATC 3 cut(s) 309, 430, 549
MboI GATC 3 cut(s) 307, 428, 547
MboII GAAGA 7 cut(s) 127, 140, 172, 270, 413, 480, 616
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 4 cut(s) 29, 86, 233, 465
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 7 cut(s) 146, 254, 343, 358, 544, 558, 568
MseI TTAA 2 cut(s) 213, 450
MslI CAYNNNNRTG 1 cut(s) 292
MspI CCGG 3 cut(s) 95, 107, 311
MunI CAATTG 1 cut(s) 86
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 3 cut(s) 307, 428, 547
NlaIII CATG 1 cut(s) 631
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 155
PspPPI RGGWCCY 1 cut(s) 155
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 2 cut(s) 213, 450
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 3 cut(s) 307, 428, 547
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 392
SduI GDGCHC 1 cut(s) 627
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 4 cut(s) 29, 86, 233, 465
SsiI CCGC 4 cut(s) 120, 435, 442, 514
TaaI ACNGT 2 cut(s) 57, 227
TaiI ACGT 2 cut(s) 174, 345
TaqI TCGA 3 cut(s) 151, 256, 518
TasI AATT 4 cut(s) 29, 86, 233, 465
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 213, 450
Tru9I TTAA 2 cut(s) 213, 450
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 155
XagI CCTNNNNNAGG 1 cut(s) 562
XapI RAATTY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.