Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

13250810 .. 13252037

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGTGTGAGATCAAGTTTCGTGGTTTTCTCGTTTTTCTTTTTGGTTACAATAGCCTCATCTATTTCTCAAGCAGAAGCTCTTTCAATTGGTGGTTTTGAACACCATGAAATTCCTGTTCCGGTAGTTGGCCCTGAGAGTGTGGCGTTTGACTGCAGCGGAGCAGCCTACGTCGGGGTTGCGGACGGGCGGATTTTTAAATGGCTTGGGAGGCAATATGGATGGGCGGAGTTTGCCACAACCTCCACATCTAGGCCAAGAGCATTGTGCGACGGCTCCACCAACAAAGACAATGAGCCAACTTGTGGGAGACCCCTCGGCCTCAAGTTCCACCCCACCACATGCGAGCTTTACATAGCCGATGCCTATTTCGGGCTCTTGAAGACAGGACCTAACGGCGGGGTAGCCCGACAACTTGCAACTTCAGCAGAAGGAATCCCTTTTCAGTTTACAAATTCTGTGGATATTAATCCCGTAACTGGAATGGTTTATTTCACAGATTCAAGCTCGGTTTATCAAAGAAGGAATTGGGAGTCGTCATTCAACACCGGTGACAAAACTGGAAGACTAATGAGATATAATCCAAGTGCAAACCGCGTGGAAGTTTTGCTCCGTGGTTTGTCTTTTGCAAATGGTGTAGCTCAAAAACATTCTAAGGTATTGGGTTCGAGGACCAAGAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

228

Amino Acids

24.81

Weight (kDa)

8.91

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	152 - 214	3.6e-19	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccII	CGCG	1 cut(s)	597
AciI	CCGC	6 cut(s)	159, 182, 190, 227, 399, 595
AcsI	RAATTY	2 cut(s)	111, 454
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	7 cut(s)	128, 174, 252, 305, 372, 398, 479
AgeI	ACCGGT	1 cut(s)	548
AgsI	TTSAA	5 cut(s)	87, 101, 382, 504, 544
AluBI	AGCT	5 cut(s)	80, 349, 507, 641, 681
AluI	AGCT	5 cut(s)	80, 349, 507, 641, 681
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	3 cut(s)	130, 254, 319
ApeKI	GCWGC	2 cut(s)	156, 164
ApoI	RAATTY	2 cut(s)	111, 454
AseI	ATTAAT	1 cut(s)	468
AsiGI	ACCGGT	1 cut(s)	548
AspS9I	GGNCC	3 cut(s)	131, 389, 672
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	389, 672
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	389, 571
BbvI	GCAGC	2 cut(s)	168, 176
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	2 cut(s)	289, 412
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	2 cut(s)	157, 165
BlsI	GCNGC	2 cut(s)	158, 166
Bme18I	GGWCC	2 cut(s)	389, 672
BmgT120I	GGNCC	3 cut(s)	131, 389, 672
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	352
BpiI	GAAGAC	2 cut(s)	389, 571
BpuEI	CTTGAG	2 cut(s)	54, 308
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	316, 613
BsaWI	WCCGGW	2 cut(s)	121, 548
Bsc4I	CCNNNNNNNGG	7 cut(s)	128, 174, 252, 305, 372, 398, 479
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	484, 565
Bse8I	GATNNNNATC	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	316, 613
BseGI	GGATG	1 cut(s)	227
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	7 cut(s)	128, 174, 252, 305, 372, 398, 479
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	484, 565
BseXI	GCAGC	2 cut(s)	168, 176
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	132, 256, 321
BshTI	ACCGGT	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	122, 549
BslI	CCNNNNNNNGG	7 cut(s)	128, 174, 252, 305, 372, 398, 479
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	132, 256, 321
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	6 cut(s)	159, 182, 190, 227, 399, 595
BspANI	GGCC	3 cut(s)	132, 256, 321
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	484, 565
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	316, 613
BssMI	GATC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	135, 654
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	597
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 233, 425
BstNSI	RCATGY	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	168, 176
BstV2I	GAAGAC	2 cut(s)	389, 571
BsuRI	GGCC	3 cut(s)	132, 256, 321
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	3 cut(s)	131, 389, 672
CspAI	ACCGGT	1 cut(s)	548
CspCI	CAANNNNNGTGG	5 cut(s)	38, 441, 476, 579, 614
CviAII	CATG	2 cut(s)	107, 342
DdeI	CTNAG	2 cut(s)	135, 654
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
DraI	TTTAAA	1 cut(s)	199
EciI	GGCGGA	2 cut(s)	205, 242
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	389, 672
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	378
FaeI	CATG	2 cut(s)	110, 345
FaiI	YATR	5 cut(s)	108, 219, 343, 356, 579
FatI	CATG	2 cut(s)	106, 341
FauI	CCCGC	1 cut(s)	392
Fnu4HI	GCNGC	2 cut(s)	157, 165
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	157, 165
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	157, 165
HaeIII	GGCC	3 cut(s)	132, 256, 321
HapII	CCGG	2 cut(s)	122, 549
Hin1II	CATG	2 cut(s)	110, 345
HinfI	GANTC	3 cut(s)	435, 500, 533
HpaII	CCGG	2 cut(s)	122, 549
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	1 cut(s)	450
Hpy99I	CGWCG	2 cut(s)	176, 275
HpyAV	CCTTC	2 cut(s)	425, 516
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	156, 419, 590, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 233, 425
HpyF3I	CTNAG	2 cut(s)	135, 654
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	110, 345
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	161, 281, 615
LpnPI	CCDG	7 cut(s)	129, 135, 147, 372, 465, 546, 562
Lsp1109I	GCAGC	2 cut(s)	168, 176
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	46, 475, 551
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	2 cut(s)	394, 576
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	4 cut(s)	87, 111, 454, 526
MlyI	GAGTC	1 cut(s)	542
MnlI	CCTC	6 cut(s)	67, 204, 253, 326, 332, 663
MseI	TTAA	2 cut(s)	198, 468
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	2 cut(s)	122, 549
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	3 cut(s)	211, 233, 425
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	110, 345
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	435, 500
PflMI	CCANNNNNTGG	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	158, 166
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	3 cut(s)	131, 389, 672
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	198, 468
SatI	GCNGC	2 cut(s)	157, 165
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	3 cut(s)	131, 389, 672
SchI	GAGTC	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	9 cut(s)	82, 174, 245, 351, 394, 509, 643, 660, 683
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	154
SgrAI	CRCCGGYG	1 cut(s)	548
SinI	GGWCC	2 cut(s)	389, 672
SmlI	CTYRAG	2 cut(s)	69, 323
SmoI	CTYRAG	2 cut(s)	69, 323
Sse9I	AATT	4 cut(s)	87, 111, 454, 526
SsiI	CCGC	6 cut(s)	159, 182, 190, 227, 399, 595
SspMI	CTAG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	668
TasI	AATT	4 cut(s)	87, 111, 454, 526
TfiI	GAWTC	2 cut(s)	435, 500
Tru1I	TTAA	2 cut(s)	198, 468
Tru9I	TTAA	2 cut(s)	198, 468
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	156, 164
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	602
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	389, 672
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	2 cut(s)	111, 454
XceI	RCATGY	1 cut(s)	345
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.