Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

3710439 .. 3715532

Gene Structure 5094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1052500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAGACCACCTTCATTTCTTTTGTTGTTTTTGCTCCTAACTGTCATAGCTCCTGACGCCATTCTAACATCCAAACCAGCTTCTTGTAAGTCCGTCAACCTCGGAAACTACCGTGAGATAGAGCTGGCTAGGGTTGTTGGCCCTGAAAGCATTGCCTTTGACTGCCGTGGAAATGGACCCTACGTTGGGGTTTCGGATGGTACGATCCTCAAATGGCAAGGACCTCACCTGGGTTGGACGGAGTTCGCCTTCACCTCCCCAAACAGGGCAAGGAAACTATGTGATGGTTCAACCAACGTGACGAACGAACCAATGTGTGGGAGGCCACTGGGAATGATGTTCCACCCTAAAACCTGTGATCTCTACTTTGCAGATGCCTACTTTGGGCTGATGAAGACGGGGCCTAATGGTGGTAAGGCGGAGGTTCTTGCCAATTCTATAGGAGGAGTCCCCTTCCTTTTTGTAAACTCTTTGGATATTGATGAAGAAACAGGAATCGTTTATTTCACAGACACAAGCACTGTGTTCCAAAGAAGGGTATGGGTTCAGTCGGTCCTAGCCGGTGACAATACTGGTAGGCTACTACAATACGACCCACGTACAAAGAAAGTGAAAGTATTGCTCCACGGTCTGGGTTTTGCAAACGGCGTGGCTCTGAGCGGCGACAAGTCCTTTGTCCTCGTCGTCGAATCCGCCGAGTTTAGAATCCACAGGCTGTGGCTCCGAGGCCCCAAAGCTCATGTGTTGGAACTTTTTACTCAGCTGCAGAGGCCTCCGGATAACATCAAGAGAACCAAAAAAGGAGAGTTTTGGGTTGGACTCAACAGTGGAAGAGGAGTTAAGGGAGTGCAGAACAAAGTGCAGAATATGATAAATAATAATGAAAGCTCGGGGGAGTTGTTGAATGTGAATGATCCTGTGGGGGTGAAACTTGACAAACAAGGTAGGGTTTTGCAGGTTTTGGATGGAGAGGGTGGTAAAGCTTTGCAGTCTGTTAGTGAGGTTGAAGAACACAATGGGATTTTGTGGATTGGATCAGTGGTGACTTCTTATGTTGGTGTGATCAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

358

Amino Acids

39.07

Weight (kDa)

8.86

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	156 - 243	1.4e-29	Strictosidine synthase
SGL	PF08450	189 - 290	1.7e-07	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	946
AccB7I	CCANNNNNTGG	2 cut(s)	317, 631
AccBSI	CCGCTC	1 cut(s)	660
AccIII	TCCGGA	1 cut(s)	775
AciI	CCGC	3 cut(s)	419, 660, 693
AclWI	GGATC	3 cut(s)	199, 908, 1042
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	202, 601
AgsI	TTSAA	3 cut(s)	291, 904, 1007
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	7 cut(s)	50, 80, 124, 737, 763, 888, 983
AluI	AGCT	7 cut(s)	50, 80, 124, 737, 763, 888, 983
AlwI	GGATC	3 cut(s)	199, 908, 1042
Ama87I	CYCGRG	1 cut(s)	889
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	5 cut(s)	139, 323, 401, 727, 770
ApeKI	GCWGC	1 cut(s)	763
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AspS9I	GGNCC	6 cut(s)	140, 176, 221, 401, 553, 728
AsuHPI	GGTGA	5 cut(s)	218, 244, 575, 937, 1054
AvaI	CYCGRG	1 cut(s)	889
AvaII	GGWCC	3 cut(s)	176, 221, 553
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	750
BccI	CCATC	3 cut(s)	191, 278, 959
BceAI	ACGGC	2 cut(s)	150, 661
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	1062
BfaI	CTAG	2 cut(s)	129, 557
BfmI	CTRYAG	2 cut(s)	438, 764
BfuAI	ACCTGC	1 cut(s)	946
BisI	GCNGC	2 cut(s)	661, 764
BlsI	GCNGC	2 cut(s)	662, 765
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	3 cut(s)	176, 221, 553
BmeT110I	CYCGRG	1 cut(s)	889
BmgT120I	GGNCC	6 cut(s)	140, 176, 221, 401, 553, 728
BmiI	GGNNCC	4 cut(s)	178, 402, 722, 730
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	5 cut(s)	100, 166, 229, 625, 724
BsaWI	WCCGGW	1 cut(s)	775
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	333, 577
Bse3DI	GCAATG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	5 cut(s)	100, 166, 229, 625, 724
BseGI	GGATG	3 cut(s)	68, 202, 970
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	647, 773
BseNI	ACTGG	2 cut(s)	333, 577
BseRI	GAGGAG	2 cut(s)	459, 849
BseXI	GCAGC	1 cut(s)	750
BsgI	GTGCAG	2 cut(s)	869, 881
BshFI	GGCC	5 cut(s)	141, 325, 403, 729, 772
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	2 cut(s)	561, 776
BslFI	GGGAC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	5 cut(s)	141, 325, 403, 729, 772
BsoBI	CYCGRG	1 cut(s)	889
Bsp13I	TCCGGA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	204, 358, 913, 1034, 1062
BspACI	CCGC	3 cut(s)	419, 660, 693
BspANI	GGCC	5 cut(s)	141, 325, 403, 729, 772
BspCNI	CTCAG	2 cut(s)	648, 772
BspEI	TCCGGA	1 cut(s)	775
BspLI	GGNNCC	4 cut(s)	178, 402, 722, 730
BspMAI	CTGCAG	1 cut(s)	768
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	3 cut(s)	199, 908, 1042
BsrBI	CCGCTC	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	333, 577
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	5 cut(s)	100, 166, 229, 625, 724
BssMI	GATC	5 cut(s)	204, 358, 913, 1034, 1062
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	5 cut(s)	43, 113, 523, 629, 827
Bst6I	CTCTTC	1 cut(s)	826
BstACI	GRCGYC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	656, 759
BstDSI	CCRYGG	2 cut(s)	166, 625
BstF5I	GGATG	3 cut(s)	68, 202, 970
BstKTI	GATC	5 cut(s)	207, 361, 916, 1037, 1065
BstMBI	GATC	5 cut(s)	204, 358, 913, 1034, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 147, 769
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	438, 764
BstV1I	GCAGC	1 cut(s)	750
BstV2I	GAAGAC	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	141, 325, 403, 729, 772
BtgI	CCRYGG	2 cut(s)	166, 625
BtsCI	GGATG	3 cut(s)	68, 202, 970
BtsIMutI	CAGTG	4 cut(s)	326, 519, 832, 1044
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	6 cut(s)	140, 176, 221, 401, 553, 728
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	201, 600
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	2 cut(s)	201, 600
DdeI	CTNAG	2 cut(s)	656, 759
DpnI	GATC	5 cut(s)	206, 360, 915, 1036, 1064
DpnII	GATC	5 cut(s)	204, 358, 913, 1034, 1062
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
EciI	GGCGGA	2 cut(s)	434, 682
Eco147I	AGGCCT	1 cut(s)	772
Eco47I	GGWCC	3 cut(s)	176, 221, 553
Eco88I	CYCGRG	1 cut(s)	889
EcoO109I	RGGNCCY	3 cut(s)	221, 401, 728
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	743
FaiI	YATR	7 cut(s)	47, 280, 440, 541, 741, 869, 1053
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	1062
Fnu4HI	GCNGC	2 cut(s)	661, 764
FokI	GGATG	3 cut(s)	55, 209, 977
Fsp4HI	GCNGC	2 cut(s)	661, 764
FspBI	CTAG	2 cut(s)	129, 557
GluI	GCNGC	2 cut(s)	661, 764
HaeIII	GGCC	5 cut(s)	141, 325, 403, 729, 772
HapII	CCGG	2 cut(s)	561, 776
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	743
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	981
HinfI	GANTC	5 cut(s)	447, 495, 689, 705, 819
HpaII	CCGG	2 cut(s)	561, 776
HphI	GGTGA	5 cut(s)	218, 244, 575, 937, 1054
Hpy166II	GTNNAC	2 cut(s)	97, 466
Hpy188I	TCNGA	4 cut(s)	104, 196, 657, 725
Hpy188III	TCNNGA	4 cut(s)	53, 776, 787, 1066
Hpy8I	GTNNAC	2 cut(s)	97, 466
Hpy99I	CGWCG	2 cut(s)	686, 689
HpyAV	CCTTC	4 cut(s)	21, 259, 463, 528
HpyCH4III	ACNGT	5 cut(s)	43, 113, 523, 629, 827
HpyCH4IV	ACGT	3 cut(s)	183, 297, 598
HpyCH4V	TGCA	7 cut(s)	371, 641, 766, 850, 862, 955, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 147, 769
HpyF3I	CTNAG	2 cut(s)	656, 759
HpySE526I	ACGT	3 cut(s)	183, 297, 598
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	743
Kpn2I	TCCGGA	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	1062
Kzo9I	GATC	5 cut(s)	204, 358, 913, 1034, 1062
LmnI	GCTCC	4 cut(s)	39, 55, 627, 726
Lsp1109I	GCAGC	1 cut(s)	750
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	129, 557
MaeII	ACGT	3 cut(s)	183, 297, 598
MaeIII	GTNAC	3 cut(s)	298, 563, 1042
MalI	GATC	5 cut(s)	206, 360, 915, 1036, 1064
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	5 cut(s)	204, 358, 913, 1034, 1062
MboII	GAAGA	4 cut(s)	406, 497, 843, 1019
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	2 cut(s)	456, 813
MmeI	TCCRAC	3 cut(s)	215, 726, 796
MroI	TCCGGA	1 cut(s)	775
MseI	TTAA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	763
MspI	CCGG	2 cut(s)	561, 776
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	56, 147, 769
NdeII	GATC	5 cut(s)	204, 358, 913, 1034, 1062
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	4 cut(s)	178, 402, 722, 730
NmeAIII	GCCGAG	1 cut(s)	721
NmuCI	GTSAC	3 cut(s)	298, 563, 1042
PceI	AGGCCT	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	3 cut(s)	200, 303, 693
PfeI	GAWTC	3 cut(s)	495, 689, 705
PflMI	CCANNNNNTGG	2 cut(s)	317, 631
PkrI	GCNGC	2 cut(s)	662, 765
PleI	GAGTC	2 cut(s)	455, 813
PpsI	GAGTC	2 cut(s)	455, 813
Ppu21I	YACGTR	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	178, 402, 722, 730
PspPI	GGNCC	6 cut(s)	140, 176, 221, 401, 553, 728
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	763
RsaI	GTAC	2 cut(s)	202, 601
RsaNI	GTAC	2 cut(s)	201, 600
SaqAI	TTAA	1 cut(s)	840
SatI	GCNGC	2 cut(s)	661, 764
Sau3AI	GATC	5 cut(s)	204, 358, 913, 1034, 1062
Sau96I	GGNCC	6 cut(s)	140, 176, 221, 401, 553, 728
SchI	GAGTC	2 cut(s)	456, 813
ScrFI	CCNGG	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	2 cut(s)	438, 764
SinI	GGWCC	3 cut(s)	176, 221, 553
Sse9I	AATT	1 cut(s)	433
SseBI	AGGCCT	1 cut(s)	772
SsiI	CCGC	3 cut(s)	419, 660, 693
SspMI	CTAG	2 cut(s)	129, 557
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	5 cut(s)	43, 113, 523, 629, 827
TaiI	ACGT	3 cut(s)	186, 300, 601
TaqI	TCGA	1 cut(s)	687
TaqII	GACCGA	1 cut(s)	541
TasI	AATT	1 cut(s)	433
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	3 cut(s)	495, 689, 705
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	4 cut(s)	333, 526, 832, 1044
TseFI	GTSAC	3 cut(s)	298, 563, 1042
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	3 cut(s)	298, 563, 1042
TspDTI	ATGAA	3 cut(s)	407, 498, 897
TspGWI	ACGGA	2 cut(s)	82, 254
TspRI	CASTG	4 cut(s)	333, 526, 832, 1044
Van91I	CCANNNNNTGG	2 cut(s)	317, 631
VpaK11BI	GGWCC	3 cut(s)	176, 221, 553
XspI	CTAG	2 cut(s)	129, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.