Rorug07G0027600

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000674
Physical Location & Seq
Reverse (-)
1935770 .. 1938819
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0027600.1

Sequence Viewer

Length: 1026 bp
ATGGAGGAGGCAAAAGCGGCGGCGTACTACGAAGACCTAACCCGGCGCGGCGAAGGCGCCGCCCGGTTCAAACAAGGCTTGGGCTTCTCTACGGCCAAGTCCAATTCCGAAAATGCCCCTGTGCGCGGTTCGGCGGTGGCGTATACTTCCTCGTCTTCCTTCATGAGCAAATTCGTCAAGGCCTCCAGCCCTAGCAAGACGACGGAGGTCGAAAAGCAAGCGCAGATCCAGTCGATTCAGAACAAGCTGAAGAGGAAGAAGCCGGAGGAGCTGGCCGGAGAGGAAGAGAAGCGGCGGCCTAGGGTTTCGGAGAGGGATAAGCGGAGTAGAAGCAGAGAGAGGGAGTCGAGGCGTAGGAGTAGGAGCAGAGAGAGGTATAGAGATAGGGAGAGAGATAGAGAGAGAAGGAGGAGGAGGAGGAGCAGGTCTGGGAGTGAATCGGACGGAGATAGGAGACGAAGGAGTCGGAGAAAGGAACGGCGGAGGAGCCGGAGCTGGAGCTCGTCGCCGCCTAGGGAGAGGGGTTTGGATAAGAGCAGAGGTAAATTGGAGAAGGAGAGGAGTGGCGGTGGTGCTGACTATTACAAATTGATTCAAGGCTATGACAAAATGTCTGCAGTGGAGAGAGTAAAAGCGAAAATGAAACTCCAACTTGCCGAAACGGCTGAGAAGGACACAACCAAAGGCATGGATGGTTGGGAAAGATTTGAATTCGATAAAGATGCACCACTAGACGATGAGGAGGTTGAAGTTGCTGAAGACGATGCAGCGCTCGTCAATCACATAGGCAAAAGCTTTCGGTTTTCAGCATTTGAGACAAAAAGGGAGGAGCGGATCAAAGCTGCTCATGATGAGGCAATGTTTGGTGCATCAGATAATCAACCATCCATTATGATAGACAGTGACGTTGAGGCAGAGAATGATAATAAGGACTGCAAAGAAAGTGAGCCTCCAAGCCTTTTGAGTGAGAAGGTACTTGCCAAAAAACAAGGTTCGTGGCGTGATCGTATACGCCACAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

341

Amino Acids

39.49

Weight (kDa)

9.9

Isoelectric Point (pI)

87.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 462
Acc36I ACCTGC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 832
AccI GTMKAC 2 cut(s) 143, 1009
AccII CGCG 2 cut(s) 48, 126
AclWI GGATC 2 cut(s) 220, 842
AcoI YGGCCR 2 cut(s) 93, 273
AcsI RAATTY 2 cut(s) 170, 710
AcuI CTGAAG 2 cut(s) 269, 777
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 26, 975
AfeI AGCGCT 1 cut(s) 771
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 70, 596, 710, 749
AhdI GACNNNNNGTC 1 cut(s) 610
AluBI AGCT 6 cut(s) 247, 271, 495, 501, 795, 842
AluI AGCT 6 cut(s) 247, 271, 495, 501, 795, 842
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 2 cut(s) 448, 809
AlwI GGATC 2 cut(s) 220, 842
Aor51HI AGCGCT 1 cut(s) 771
AoxI GGCC 4 cut(s) 93, 180, 273, 296
ApeKI GCWGC 2 cut(s) 767, 842
ApoI RAATTY 2 cut(s) 170, 710
AspA2I CCTAGG 2 cut(s) 299, 512
AspLEI GCGC 5 cut(s) 48, 59, 126, 223, 772
AsuC2I CCSGG 2 cut(s) 43, 64
AvrII CCTAGG 2 cut(s) 299, 512
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 503
BbsI GAAGAC 3 cut(s) 39, 147, 765
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 2 cut(s) 779, 829
BccI CCATC 2 cut(s) 686, 892
BceAI ACGGC 3 cut(s) 108, 494, 678
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BcnI CCSGG 2 cut(s) 43, 64
BcoDI GTCTC 2 cut(s) 448, 809
BfaI CTAG 4 cut(s) 192, 300, 513, 731
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 2 cut(s) 60, 773
BfuAI ACCTGC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 662
BisI GCNGC 9 cut(s) 18, 21, 49, 60, 293, 296, 509, 768, 843
BlnI CCTAGG 2 cut(s) 299, 512
BlsI GCNGC 9 cut(s) 19, 22, 50, 61, 294, 297, 510, 769, 844
Bme1390I CCNGG 2 cut(s) 43, 64
BmeRI GACNNNNNGTC 1 cut(s) 610
BmiI GGNNCC 2 cut(s) 58, 488
BmrFI CCNGG 2 cut(s) 43, 64
BmsI GCATC 3 cut(s) 712, 754, 878
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 3 cut(s) 39, 147, 765
BpmI CTGGAG 2 cut(s) 169, 517
BpuMI CCSGG 2 cut(s) 43, 64
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 299, 512
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 864
BseDI CCNNGG 2 cut(s) 299, 512
BseGI GGATG 2 cut(s) 697, 884
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 779, 829
Bsh1236I CGCG 2 cut(s) 48, 126
BshFI GGCC 4 cut(s) 95, 182, 275, 298
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 5 cut(s) 43, 64, 263, 276, 490
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 448, 809
BsmBI CGTCTC 1 cut(s) 448
BsnI GGCC 4 cut(s) 95, 182, 275, 298
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 3 cut(s) 225, 834, 1003
BspANI GGCC 4 cut(s) 95, 182, 275, 298
BspCNI CTCAG 1 cut(s) 658
BspFNI CGCG 2 cut(s) 48, 126
BspHI TCATGA 2 cut(s) 162, 847
BspLI GGNNCC 2 cut(s) 58, 488
BspMAI CTGCAG 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 2 cut(s) 220, 842
BspT107I GGYRCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 299, 512
BssMI GATC 3 cut(s) 225, 834, 1003
BssNAI GTATAC 2 cut(s) 144, 1010
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 299, 512
Bst1107I GTATAC 2 cut(s) 144, 1010
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 2 cut(s) 245, 279
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 219, 273
BstDEI CTNAG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 697, 884
BstFNI CGCG 2 cut(s) 48, 126
BstH2I RGCGCY 2 cut(s) 60, 773
BstHHI GCGC 5 cut(s) 48, 59, 126, 223, 772
BstKTI GATC 3 cut(s) 228, 837, 1006
BstMAI GTCTC 2 cut(s) 448, 809
BstMBI GATC 3 cut(s) 225, 834, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 662
BstPAI GACNNNNGTC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 41, 62
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 2 cut(s) 48, 126
BstV1I GCAGC 2 cut(s) 779, 829
BstV2I GAAGAC 3 cut(s) 39, 147, 765
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 225
BstZ17I GTATAC 2 cut(s) 144, 1010
BsuRI GGCC 4 cut(s) 95, 182, 275, 298
BtsCI GGATG 2 cut(s) 697, 884
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 624, 907
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 219, 273
CciI TCATGA 2 cut(s) 162, 847
CfoI GCGC 5 cut(s) 48, 59, 126, 223, 772
Csp6I GTAC 2 cut(s) 25, 974
CspCI CAANNNNNGTGG 3 cut(s) 977, 1004, 1012
CviAII CATG 3 cut(s) 163, 688, 848
CviQI GTAC 2 cut(s) 25, 974
DdeI CTNAG 1 cut(s) 666
DinI GGCGCC 1 cut(s) 58
DpnI GATC 3 cut(s) 227, 836, 1005
DpnII GATC 3 cut(s) 225, 834, 1003
DrdI GACNNNNNNGTC 1 cut(s) 462
DriI GACNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 462
EaeI YGGCCR 2 cut(s) 93, 273
Eam1104I CTCTTC 2 cut(s) 245, 279
Eam1105I GACNNNNNGTC 1 cut(s) 610
EarI CTCTTC 2 cut(s) 245, 279
EciI GGCGGA 1 cut(s) 496
Ecl136II GAGCTC 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 299, 512
Eco147I AGGCCT 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 503
Eco47III AGCGCT 1 cut(s) 771
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 2 cut(s) 269, 777
EcoICRI GAGCTC 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 299, 512
EcoT38I GRGCYC 1 cut(s) 503
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 299, 512
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 3 cut(s) 166, 691, 851
FaiI YATR 9 cut(s) 144, 164, 378, 603, 689, 785, 849, 893, 1010
FatI CATG 3 cut(s) 162, 687, 847
FblI GTMKAC 2 cut(s) 143, 1009
Fnu4HI GCNGC 9 cut(s) 18, 21, 49, 60, 293, 296, 509, 768, 843
FokI GGATG 2 cut(s) 704, 871
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 9 cut(s) 18, 21, 49, 60, 293, 296, 509, 768, 843
FspBI CTAG 4 cut(s) 192, 300, 513, 731
GlaI GCGC 5 cut(s) 47, 58, 125, 222, 771
GluI GCNGC 9 cut(s) 18, 21, 49, 60, 293, 296, 509, 768, 843
GsuI CTGGAG 2 cut(s) 169, 517
HaeII RGCGCY 2 cut(s) 60, 773
HaeIII GGCC 4 cut(s) 95, 182, 275, 298
HapII CCGG 5 cut(s) 43, 64, 263, 276, 490
HhaI GCGC 5 cut(s) 48, 59, 126, 223, 772
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 166, 691, 851
Hin6I GCGC 5 cut(s) 46, 57, 124, 221, 770
HinP1I GCGC 5 cut(s) 46, 57, 124, 221, 770
HindIII AAGCTT 1 cut(s) 793
HinfI GANTC 5 cut(s) 235, 344, 437, 463, 592
HpaII CCGG 5 cut(s) 43, 64, 263, 276, 490
Hpy166II GTNNAC 2 cut(s) 144, 1010
Hpy188I TCNGA 6 cut(s) 109, 240, 310, 442, 468, 874
Hpy188III TCNNGA 2 cut(s) 163, 848
Hpy8I GTNNAC 2 cut(s) 144, 1010
Hpy99I CGWCG 2 cut(s) 205, 508
HpyAV CCTTC 7 cut(s) 47, 169, 399, 453, 547, 664, 964
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 5 cut(s) 617, 725, 767, 869, 936
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 662
HpyF3I CTNAG 1 cut(s) 666
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 166, 691, 851
HspAI GCGC 5 cut(s) 46, 57, 124, 221, 770
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 3 cut(s) 225, 834, 1003
LmnI GCTCC 7 cut(s) 268, 363, 420, 486, 492, 498, 829
Lsp1109I GCAGC 2 cut(s) 779, 829
LweI GCATC 3 cut(s) 712, 754, 878
MaeI CTAG 4 cut(s) 192, 300, 513, 731
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 1 cut(s) 902
MalI GATC 3 cut(s) 227, 836, 1005
MbiI CCGCTC 1 cut(s) 832
MboI GATC 3 cut(s) 225, 834, 1003
MboII GAAGA 6 cut(s) 44, 147, 262, 268, 296, 770
MfeI CAATTG 1 cut(s) 1021
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 6 cut(s) 103, 170, 545, 587, 710, 1021
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 353, 472
MmeI TCCRAC 2 cut(s) 446, 673
MspI CCGG 5 cut(s) 43, 64, 263, 276, 490
MspR9I CCNGG 2 cut(s) 43, 64
MunI CAATTG 1 cut(s) 1021
MvnI CGCG 2 cut(s) 48, 126
MwoI GCNNNNNNNGC 4 cut(s) 17, 54, 268, 662
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 2 cut(s) 43, 64
NdeII GATC 3 cut(s) 225, 834, 1003
NlaIII CATG 3 cut(s) 166, 691, 851
NlaIV GGNNCC 2 cut(s) 58, 488
NmuCI GTSAC 1 cut(s) 902
PagI TCATGA 2 cut(s) 162, 847
PceI AGGCCT 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 3 cut(s) 235, 437, 592
PkrI GCNGC 9 cut(s) 19, 22, 50, 61, 294, 297, 510, 769, 844
PleI GAGTC 2 cut(s) 352, 471
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 352, 471
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 58, 488
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 2 cut(s) 26, 975
RsaNI GTAC 2 cut(s) 25, 974
SacI GAGCTC 1 cut(s) 503
SatI GCNGC 9 cut(s) 18, 21, 49, 60, 293, 296, 509, 768, 843
Sau3AI GATC 3 cut(s) 225, 834, 1003
SchI GAGTC 2 cut(s) 353, 472
ScrFI CCNGG 2 cut(s) 43, 64
SduI GDGCHC 1 cut(s) 503
SfaNI GCATC 3 cut(s) 712, 754, 878
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 1 cut(s) 58
Sse9I AATT 6 cut(s) 103, 170, 545, 587, 710, 1021
SseBI AGGCCT 1 cut(s) 182
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 4 cut(s) 192, 300, 513, 731
SstI GAGCTC 1 cut(s) 503
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 41, 62
StyI CCWWGG 2 cut(s) 299, 512
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 1 cut(s) 909
TaqI TCGA 4 cut(s) 210, 233, 347, 714
TasI AATT 6 cut(s) 103, 170, 545, 587, 710, 1021
TauI GCSGC 7 cut(s) 20, 23, 51, 62, 295, 298, 511
TfiI GAWTC 3 cut(s) 235, 437, 592
TscAI CASTG 2 cut(s) 624, 907
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 2 cut(s) 767, 842
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 2 cut(s) 151, 656
TspGWI ACGGA 2 cut(s) 218, 459
TspRI CASTG 2 cut(s) 624, 907
XapI RAATTY 2 cut(s) 170, 710
XmaJI CCTAGG 2 cut(s) 299, 512
XmiI GTMKAC 2 cut(s) 143, 1009
XspI CTAG 4 cut(s) 192, 300, 513, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.