FvH4_6g13920

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000674
Physical Location & Seq
Forward (+)
8540243 .. 8540947
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13920.t1

Sequence Viewer

Length: 666 bp
ATGTACCTCCGCCTACTTAGAAGCCAACTTGCGGGAGAATTGTGTGATGGTTCCACTAATAAAGACAATGAACCAACTTGCGGGAGACCTCTCGGCCTCAAATTCGACCTAAAAACATGCGAGCTTTATATTGCCGATGCCTATTTCAGCCTCTTAAAGGTGGGACCTAACGGCGGCGTTGCACAAACTCTTGCAACTGCAGTACATGGAATTCCTTTCCGGTTTACAAATGATGTGGATATTAATCCACAAACTAGAATGCAATGGGTGTCAATATTCAACACCGATGATAGCACCGGAAGACTACTGCAATATAATCCGGACTTCGGGATAGTTGAATTGCTGCAAAGTGGTTTACCTTTTGCAAATGGTGTAGTTGCAAGTCTAGTTGGTAATTTTGTGCTTGTATCCCACACTACAAGCAAAAACATTCTAAGATATTGGGTTTGGGGACCTAGAGCCAGTCAAAGCGAGATTTTTGCAATAACACAAGGTTATCCTGATAATATTAGGAGAAACATAAATGGAGAGTTCTGGGTTGTAGCAAATAGCGGCAGAAGAGGTAAAGTAGCCAAATTCGACGCCAATGGAAATTTCTTGGAAGCCATAGATGGGTTAAATCCTATCAGCCAAGCTCAACAATATCATAGTAATCTTTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

222

Amino Acids

24.53

Weight (kDa)

6.82

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 42 - 204 7.4e-08 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 86 - 151 5.1e-10 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 5 cut(s) 10, 32, 81, 174, 552
AcsI RAATTY 4 cut(s) 101, 210, 575, 592
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 2 cut(s) 5, 204
AfiI CCNNNNNNNGG 6 cut(s) 31, 80, 157, 173, 326, 612
AgsI TTSAA 2 cut(s) 280, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 2 cut(s) 124, 635
AluI AGCT 2 cut(s) 124, 635
Alw26I GTCTC 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 4 cut(s) 101, 210, 575, 592
AseI ATTAAT 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 164, 452
AvaII GGWCC 2 cut(s) 164, 452
BbsI GAAGAC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 330
BccI CCATC 2 cut(s) 41, 605
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciVI GTATCC 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 3 cut(s) 255, 386, 456
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 3 cut(s) 175, 344, 553
BlsI GCNGC 3 cut(s) 176, 345, 554
Bme18I GGWCC 2 cut(s) 164, 452
BmgT120I GGNCC 2 cut(s) 164, 452
BmiI GGNNCC 3 cut(s) 52, 165, 453
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 79
BsaWI WCCGGW 3 cut(s) 219, 296, 319
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 80, 157, 173, 326, 612
Bse1I ACTGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 6 cut(s) 31, 80, 157, 173, 326, 612
BseMI GCAATG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 220, 297, 320
BslFI GGGAC 2 cut(s) 177, 465
BslI CCNNNNNNNGG 6 cut(s) 31, 80, 157, 173, 326, 612
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 2 cut(s) 177, 465
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 319
BspACI CCGC 5 cut(s) 10, 32, 81, 174, 552
BspANI GGCC 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 52, 165, 453
BspMAI CTGCAG 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 462
BssNI GRCGYC 1 cut(s) 582
Bst6I CTCTTC 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 17, 434
BstENI CCTNNNNNAGG 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 330
BstV2I GAAGAC 1 cut(s) 307
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 164, 452
CseI GACGC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 4, 203
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 2 cut(s) 117, 206
CviJI RGCY 9 cut(s) 24, 96, 124, 150, 461, 572, 605, 630, 635
CviKI_1 RGCY 9 cut(s) 24, 96, 124, 150, 461, 572, 605, 630, 635
CviQI GTAC 2 cut(s) 4, 203
DdeI CTNAG 2 cut(s) 17, 434
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 164, 452
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 164, 452
EcoRI GAATTC 1 cut(s) 210
FaeI CATG 2 cut(s) 120, 209
FaiI YATR 8 cut(s) 118, 129, 207, 315, 521, 608, 648, 664
FaqI GGGAC 2 cut(s) 177, 465
FatI CATG 2 cut(s) 116, 205
FauI CCCGC 2 cut(s) 25, 74
Fnu4HI GCNGC 3 cut(s) 175, 344, 553
Fsp4HI GCNGC 3 cut(s) 175, 344, 553
FspBI CTAG 3 cut(s) 255, 386, 456
GluI GCNGC 3 cut(s) 175, 344, 553
HaeIII GGCC 1 cut(s) 96
HapII CCGG 3 cut(s) 220, 297, 320
HgaI GACGC 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 2 cut(s) 120, 209
HpaII CCGG 3 cut(s) 220, 297, 320
Hpy166II GTNNAC 2 cut(s) 225, 356
Hpy188III TCNNGA 3 cut(s) 320, 328, 500
Hpy8I GTNNAC 2 cut(s) 225, 356
Hpy99I CGWCG 1 cut(s) 584
HpyCH4V TGCA 9 cut(s) 182, 194, 200, 262, 310, 346, 365, 380, 482
HpyF3I CTNAG 2 cut(s) 17, 434
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 2 cut(s) 120, 209
Kpn2I TCCGGA 1 cut(s) 319
LpnPI CCDG 6 cut(s) 233, 310, 333, 475, 513, 520
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 127
MaeI CTAG 3 cut(s) 255, 386, 456
MboII GAAGA 2 cut(s) 312, 570
MluCI AATT 7 cut(s) 38, 101, 210, 338, 394, 575, 592
MnlI CCTC 5 cut(s) 17, 99, 107, 161, 554
MroI TCCGGA 1 cut(s) 319
MseI TTAA 3 cut(s) 155, 243, 617
MspI CCGG 3 cut(s) 220, 297, 320
Mva1269I GAATGC 1 cut(s) 264
NlaIII CATG 2 cut(s) 120, 209
NlaIV GGNNCC 3 cut(s) 52, 165, 453
NmeAIII GCCGAG 1 cut(s) 72
NspI RCATGY 1 cut(s) 120
PctI GAATGC 1 cut(s) 264
PkrI GCNGC 3 cut(s) 176, 345, 554
PpuMI RGGWCCY 2 cut(s) 164, 452
PshBI ATTAAT 1 cut(s) 243
Psp5II RGGWCCY 2 cut(s) 164, 452
PspN4I GGNNCC 3 cut(s) 52, 165, 453
PspPI GGNCC 2 cut(s) 164, 452
PspPPI RGGWCCY 2 cut(s) 164, 452
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 2 cut(s) 5, 204
RsaNI GTAC 2 cut(s) 4, 203
SaqAI TTAA 3 cut(s) 155, 243, 617
SatI GCNGC 3 cut(s) 175, 344, 553
Sau96I GGNCC 2 cut(s) 164, 452
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 2 cut(s) 164, 452
Sse9I AATT 7 cut(s) 38, 101, 210, 338, 394, 575, 592
SsiI CCGC 5 cut(s) 10, 32, 81, 174, 552
SspI AATATT 2 cut(s) 276, 508
SspMI CTAG 3 cut(s) 255, 386, 456
TaqI TCGA 2 cut(s) 105, 579
TasI AATT 7 cut(s) 38, 101, 210, 338, 394, 575, 592
TatI WGTACW 1 cut(s) 202
TauI GCSGC 2 cut(s) 177, 555
Tru1I TTAA 3 cut(s) 155, 243, 617
Tru9I TTAA 3 cut(s) 155, 243, 617
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 164, 452
VspI ATTAAT 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 4 cut(s) 101, 210, 575, 592
XceI RCATGY 1 cut(s) 120
XspI CTAG 3 cut(s) 255, 386, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.