Prupe.1G299700_v2.0.a1

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000674
Physical Location & Seq
Forward (+)
29478853 .. 29483910
5058 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G299700.1

Sequence Viewer

Length: 1080 bp
ATGAGGCGACCTTTTGTTTCATTCTTTTTGTTCATAGTCGTAGCCGCTCTTGATGTCATTTTATCATCTAAACCGCCGGCGGCGGCAGCAGCATCAGCAGCAGCTGCTAATTATGTGATCAACCTCAGAAATTACCATCAAATAGAGCTGGCCAGGGTAGTTGGCCCCGAAAGCATTGCCTTTGACTGCCATGGACAAGGACCTTACGTTGGGGTTTCAGATGGTACAATTCTCAAATGGCAAGGACCTCGCTTGGGTTGGATTGAGTTTGCCTTCACCTCCCCAAACAGGCCAAGGAAATTATGTGATGGGTCAACCAACGCAACGAATGAACCCATATGTGGTAGGCCACTGGGCCTCAAGTTCAACCCCAAAACTTGTGACCTGTATATTGCAGATGCCTACTTTGGGCTCCTCAAAACAGGCCCTACTGGTGGAAAGCCGGAGGTACTTGCCAGTTCTCTAGGAGGGGTGCCCTTCATGTTTACAAATGCTCTGGACGTTGATGAAGAAACAGGCATTGTCTATTTCACAGACACAAGCACTGTCTTCCAAAGAAGGGTATGGATGCAGTCAATCCTAGACGGTGACAAAACCGGGAGGCTACTAAAATATGACCCTTGTACAAAGGAGGTGACAGTGTTGCTTCATGATTTGGCTTTTGCAAATGGTGTGGCTCTAAGCAAGGACAAGTCTTTCATCCTAGTAGCCGAATCTGCCCCCTTCACAATCCACAGGCTTTGGCTTCGATGCCCCAAAGCTCCTGCCTTTGAAATTTTTGCCCAACTAGAAAGGCCTCCGGATAATATCAAGAGCAACAACAGAGGAGAATTTTGGGTTGCACTCAATAGTGGAAGAGGAGTTAAGGAAGTAGTGAATATTGAGACCTCGGACAAATGGTTGAATGTAAATGATCCTGTAGCAGCAAAGTTTGATGAGCAAGGAACAGTTGTGCTGGTGTTGGATGGAGAAGGCGGTCCAGCTCTGGAATCTGTTAGCGAGGTTGAAGAACAAAATGGGAATTTGTGGGTTGGGTCGGTAGTGAAGCCTTATGTTGGTGTAGTTAAGTTTCAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

360

Amino Acids

39.17

Weight (kDa)

5.71

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccBSI CCGCTC 1 cut(s) 47
AccIII TCCGGA 1 cut(s) 799
AciI CCGC 5 cut(s) 45, 74, 80, 83, 975
AclWI GGATC 1 cut(s) 908
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 3 cut(s) 774, 830, 1021
AfaI GTAC 3 cut(s) 226, 450, 625
AfiI CCNNNNNNNGG 8 cut(s) 209, 254, 288, 341, 408, 434, 559, 1055
AgsI TTSAA 4 cut(s) 367, 773, 904, 1007
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 104, 148, 761, 983
AluI AGCT 4 cut(s) 104, 148, 761, 983
Alw26I GTCTC 1 cut(s) 878
AlwI GGATC 1 cut(s) 908
AlwNI CAGNNNCTG 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 7 cut(s) 150, 163, 290, 347, 355, 424, 794
ApeKI GCWGC 6 cut(s) 86, 89, 98, 101, 104, 923
ApoI RAATTY 3 cut(s) 774, 830, 1021
AspS9I GGNCC 6 cut(s) 164, 200, 245, 355, 425, 977
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 3 cut(s) 268, 599, 646
AvaII GGWCC 3 cut(s) 200, 245, 977
BaeGI GKGCMC 1 cut(s) 477
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 6 cut(s) 91, 98, 101, 110, 113, 935
BccI CCATC 4 cut(s) 144, 215, 302, 959
BcgI CGANNNNNNTGC 4 cut(s) 158, 192, 230, 264
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 878
BfaI CTAG 4 cut(s) 464, 581, 704, 788
BfmI CTRYAG 1 cut(s) 918
BisI GCNGC 9 cut(s) 45, 81, 84, 87, 90, 99, 102, 105, 924
BlsI GCNGC 9 cut(s) 46, 82, 85, 88, 91, 100, 103, 106, 925
Bme1390I CCNGG 2 cut(s) 154, 598
Bme18I GGWCC 3 cut(s) 200, 245, 977
BmgT120I GGNCC 6 cut(s) 164, 200, 245, 355, 425, 977
BmiI GGNNCC 3 cut(s) 166, 413, 474
BmrFI CCNGG 2 cut(s) 154, 598
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 4 cut(s) 101, 388, 558, 740
BmuI ACTGGG 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 4 cut(s) 153, 190, 293, 888
BsaWI WCCGGW 1 cut(s) 799
Bsc4I CCNNNNNNNGG 8 cut(s) 209, 254, 288, 341, 408, 434, 559, 1055
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 3 cut(s) 357, 436, 456
Bse3DI GCAATG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 4 cut(s) 153, 190, 293, 888
BseGI GGATG 3 cut(s) 573, 699, 970
BseLI CCNNNNNNNGG 8 cut(s) 209, 254, 288, 341, 408, 434, 559, 1055
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 3 cut(s) 357, 436, 456
BseRI GAGGAG 3 cut(s) 404, 840, 873
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 6 cut(s) 91, 98, 101, 110, 113, 935
BshFI GGCC 7 cut(s) 152, 165, 292, 349, 357, 426, 796
BshNI GGYRCC 1 cut(s) 472
BsiSI CCGG 4 cut(s) 77, 443, 597, 800
BslI CCNNNNNNNGG 8 cut(s) 209, 254, 288, 341, 408, 434, 559, 1055
BsmAI GTCTC 1 cut(s) 878
BsnI GGCC 7 cut(s) 152, 165, 292, 349, 357, 426, 796
Bso31I GGTCTC 1 cut(s) 878
Bsp1286I GDGCHC 2 cut(s) 414, 477
Bsp13I TCCGGA 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 623
Bsp143I GATC 2 cut(s) 117, 913
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 5 cut(s) 45, 74, 80, 83, 975
BspANI GGCC 7 cut(s) 152, 165, 292, 349, 357, 426, 796
BspCNI CTCAG 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 799
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 3 cut(s) 166, 413, 474
BspPI GGATC 1 cut(s) 908
BspT107I GGYRCC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 878
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 623
BsrI ACTGG 3 cut(s) 357, 436, 456
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 4 cut(s) 153, 190, 293, 888
BssMI GATC 2 cut(s) 117, 913
BssT1I CCWWGG 2 cut(s) 190, 293
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 547, 587, 640, 949
Bst6I CTCTTC 1 cut(s) 850
BstAPI GCANNNNNTGC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 78, 150
BstDEI CTNAG 2 cut(s) 125, 680
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 3 cut(s) 573, 699, 970
BstKTI GATC 2 cut(s) 120, 916
BstMAI GTCTC 1 cut(s) 878
BstMBI GATC 2 cut(s) 117, 913
BstMWI GCNNNNNNNGC 7 cut(s) 86, 89, 95, 98, 104, 171, 716
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 152, 596
BstSFI CTRYAG 1 cut(s) 918
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 6 cut(s) 91, 98, 101, 110, 113, 935
BstV2I GAAGAC 1 cut(s) 541
BsuRI GGCC 7 cut(s) 152, 165, 292, 349, 357, 426, 796
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 3 cut(s) 573, 699, 970
BtsIMutI CAGTG 3 cut(s) 350, 543, 645
Cac8I GCNNGC 2 cut(s) 78, 150
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 649
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 6 cut(s) 164, 200, 245, 355, 425, 977
Csp6I GTAC 3 cut(s) 225, 449, 624
CspCI CAANNNNNGTGG 4 cut(s) 654, 689, 722, 757
CviAII CATG 3 cut(s) 191, 481, 650
CviQI GTAC 3 cut(s) 225, 449, 624
DdeI CTNAG 2 cut(s) 125, 680
DpnI GATC 2 cut(s) 119, 915
DpnII GATC 2 cut(s) 117, 913
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
Eco130I CCWWGG 2 cut(s) 190, 293
Eco147I AGGCCT 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 878
Eco47I GGWCC 3 cut(s) 200, 245, 977
EcoO109I RGGNCCY 3 cut(s) 200, 245, 425
EcoRII CCWGG 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 190, 293
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 190, 293
FaeI CATG 3 cut(s) 194, 484, 653
FatI CATG 3 cut(s) 190, 480, 649
FauNDI CATATG 1 cut(s) 338
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 9 cut(s) 45, 81, 84, 87, 90, 99, 102, 105, 924
FokI GGATG 3 cut(s) 580, 686, 977
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 9 cut(s) 45, 81, 84, 87, 90, 99, 102, 105, 924
FspBI CTAG 4 cut(s) 464, 581, 704, 788
GluI GCNGC 9 cut(s) 45, 81, 84, 87, 90, 99, 102, 105, 924
HaeIII GGCC 7 cut(s) 152, 165, 292, 349, 357, 426, 796
HapII CCGG 4 cut(s) 77, 443, 597, 800
Hin1II CATG 3 cut(s) 194, 484, 653
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 2 cut(s) 713, 989
HpaII CCGG 4 cut(s) 77, 443, 597, 800
HphI GGTGA 3 cut(s) 268, 599, 646
Hpy166II GTNNAC 2 cut(s) 315, 486
Hpy188I TCNGA 3 cut(s) 128, 220, 892
Hpy188III TCNNGA 6 cut(s) 50, 497, 650, 800, 811, 986
Hpy8I GTNNAC 2 cut(s) 315, 486
HpyAV CCTTC 5 cut(s) 283, 487, 552, 733, 965
HpyCH4III ACNGT 4 cut(s) 547, 587, 640, 949
HpyCH4IV ACGT 2 cut(s) 207, 501
HpyCH4V TGCA 4 cut(s) 395, 571, 665, 842
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 89, 95, 98, 104, 171, 716
HpyF3I CTNAG 2 cut(s) 125, 680
HpySE526I ACGT 2 cut(s) 207, 501
Hsp92II CATG 3 cut(s) 194, 484, 653
Kpn2I TCCGGA 1 cut(s) 799
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 117, 913
LmnI GCTCC 2 cut(s) 417, 766
Lsp1109I GCAGC 6 cut(s) 91, 98, 101, 110, 113, 935
LweI GCATC 4 cut(s) 101, 388, 558, 740
MaeI CTAG 4 cut(s) 464, 581, 704, 788
MaeII ACGT 2 cut(s) 207, 501
MaeIII GTNAC 3 cut(s) 380, 587, 634
MalI GATC 2 cut(s) 119, 915
MbiI CCGCTC 1 cut(s) 47
MboI GATC 2 cut(s) 117, 913
MboII GAAGA 4 cut(s) 521, 541, 867, 1019
MhlI GDGCHC 2 cut(s) 414, 477
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 7 cut(s) 109, 130, 228, 299, 774, 830, 1021
MluNI TGGCCA 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 239, 942
Mox20I TGGCCA 1 cut(s) 152
MreI CGCCGGCG 1 cut(s) 76
MroI TCCGGA 1 cut(s) 799
MroNI GCCGGC 1 cut(s) 76
MscI TGGCCA 1 cut(s) 152
MseI TTAA 2 cut(s) 864, 1065
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 4 cut(s) 77, 443, 597, 800
MspR9I CCNGG 2 cut(s) 154, 598
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 7 cut(s) 86, 89, 95, 98, 104, 171, 716
NaeI GCCGGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 598
NcoI CCATGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 338
NdeII GATC 2 cut(s) 117, 913
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 3 cut(s) 194, 484, 653
NlaIV GGNNCC 3 cut(s) 166, 413, 474
NmuCI GTSAC 3 cut(s) 380, 587, 634
PagI TCATGA 1 cut(s) 649
PceI AGGCCT 1 cut(s) 796
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 713, 989
PkrI GCNGC 9 cut(s) 46, 82, 85, 88, 91, 100, 103, 106, 925
PpuMI RGGWCCY 2 cut(s) 200, 245
Psp5II RGGWCCY 2 cut(s) 200, 245
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 166, 413, 474
PspPI GGNCC 6 cut(s) 164, 200, 245, 355, 425, 977
PspPPI RGGWCCY 2 cut(s) 200, 245
PstNI CAGNNNCTG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 3 cut(s) 226, 450, 625
RsaNI GTAC 3 cut(s) 225, 449, 624
SaqAI TTAA 2 cut(s) 864, 1065
SatI GCNGC 9 cut(s) 45, 81, 84, 87, 90, 99, 102, 105, 924
Sau3AI GATC 2 cut(s) 117, 913
Sau96I GGNCC 6 cut(s) 164, 200, 245, 355, 425, 977
ScrFI CCNGG 2 cut(s) 154, 598
SduI GDGCHC 2 cut(s) 414, 477
SfaNI GCATC 4 cut(s) 101, 388, 558, 740
SfcI CTRYAG 1 cut(s) 918
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 3 cut(s) 200, 245, 977
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 7 cut(s) 109, 130, 228, 299, 774, 830, 1021
SseBI AGGCCT 1 cut(s) 796
SsiI CCGC 5 cut(s) 45, 74, 80, 83, 975
SspI AATATT 1 cut(s) 880
SspMI CTAG 4 cut(s) 464, 581, 704, 788
StuI AGGCCT 1 cut(s) 796
StyD4I CCNGG 2 cut(s) 152, 596
StyI CCWWGG 2 cut(s) 190, 293
TaaI ACNGT 4 cut(s) 547, 587, 640, 949
TaiI ACGT 2 cut(s) 210, 504
TaqI TCGA 1 cut(s) 748
TasI AATT 7 cut(s) 109, 130, 228, 299, 774, 830, 1021
TatI WGTACW 1 cut(s) 623
TauI GCSGC 3 cut(s) 47, 83, 86
TfiI GAWTC 2 cut(s) 713, 989
Tru1I TTAA 2 cut(s) 864, 1065
Tru9I TTAA 2 cut(s) 864, 1065
TscAI CASTG 3 cut(s) 357, 550, 645
TseFI GTSAC 3 cut(s) 380, 587, 634
TseI GCWGC 6 cut(s) 86, 89, 98, 101, 104, 923
Tsp45I GTSAC 3 cut(s) 380, 587, 634
TspDTI ATGAA 7 cut(s) 9, 22, 345, 469, 522, 638, 688
TspRI CASTG 3 cut(s) 357, 550, 645
VpaK11BI GGWCC 3 cut(s) 200, 245, 977
XapI RAATTY 3 cut(s) 774, 830, 1021
XspI CTAG 4 cut(s) 464, 581, 704, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.