Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

59936024 .. 59937685

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGCTATATTTTCTTTCACTCTTGTTCTTCTTTTCGTTAATCCTAGCATCATCCACACCAGCATCAGCTTTCTTTGTTGTCAACCTCACAAATTACCATCAGATCGAGCTCCCAAAAAGCGTAGTTGGTCCGGAAAGCATTGCGTTCGACTGCCGTGGAAAAGGACCTTATGTTGGAGTTTCAGATGGAAGAATTCTCAAATGGCAAGGGCCTTGCCGGGGCTGGACGGAGCCAAGGAAAATATGTGATGGTTCAACCGATAATACGACTGAACCAATATGTGGAAGGCCACTAGGCTTGAAGTTCAACCCAAAAACTTGTGAACTCTATATAGCAGACGCCTACTTCGGGCTGTTAAAGATAGGTCGCAATGGTGGTCGTCCTCAACAACTTGCCACTTCCCTAAATGGAGTCCCTTTCCGTTTTCTGAATGCTCTGGACATTGATAGTCAAAGTGGAATTGTTTATTTTACAGACACCAGCACAGTTTACCAAAGAAGGTTGTGGCCTTTGTCAATTGCCACAGGTGACAAAACCGGAAGGTTATTGCAATACGACCCTTGTACAAAGAAGGTGACTGTGTTGCTCGATAACTTGGCTTTTGCAAATGGTGTGGCTCTAAGCGAGGACAGTTCTTTCCTCCTAGTAGCCGAATCCGCCACATTCAAAATCTTCAAGCTTTGGCTTCGAGGACCCAAAGCTTACGACGTAAAACTCTTCACTCAACTGAAAAGGCCAGCCGATAACATTAAGAGGACCAACGGTGGTGAATTTTGGGCTGCGCTCAATAGTCTAAGAGGATTACAGGGTAACCAGACTTCTCCATCCTTGTGGTTGACGAAAGATCCGGTGGGAGTGAAGTTTGATGAACAAGGAAACGTAATGGAGGTGTTAGATGGAGAGGGTGGTCCGACGCTTGAGTCCATTAGTGAGGTTGAAGAACACAACGGAAAGTTGTGGATTGGATCGGTAGTAAAGTCCTATGTTGGAGTTATCAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

335

Amino Acids

36.94

Weight (kDa)

8.77

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	145 - 232	9.5e-29	Strictosidine synthase
SGL	PF08450	176 - 264	2.9e-07	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	2 cut(s)	842, 976
AcsI	RAATTY	2 cut(s)	195, 773
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	4 cut(s)	176, 221, 284, 351
AgsI	TTSAA	6 cut(s)	258, 304, 310, 670, 679, 941
AluBI	AGCT	5 cut(s)	7, 71, 112, 682, 704
AluI	AGCT	5 cut(s)	7, 71, 112, 682, 704
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	842, 976
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	4 cut(s)	212, 290, 509, 737
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	2 cut(s)	195, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	6 cut(s)	131, 167, 212, 695, 759, 911
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	542, 589, 782
AvaII	GGWCC	5 cut(s)	131, 167, 695, 759, 911
BanII	GRGCYC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	805, 837
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	5 cut(s)	108, 182, 245, 835, 893
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	3 cut(s)	47, 296, 647
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	5 cut(s)	131, 167, 695, 759, 911
BmgT120I	GGNCC	6 cut(s)	131, 167, 212, 695, 759, 911
BmiI	GGNNCC	2 cut(s)	234, 697
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	59, 74
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	157, 220, 236
BsaWI	WCCGGW	3 cut(s)	133, 539, 850
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 221, 284, 351
Bse3DI	GCAATG	2 cut(s)	141, 379
BseAI	TCCGGA	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	157, 220, 236
BseGI	GGATG	2 cut(s)	53, 827
BseLI	CCNNNNNNNGG	4 cut(s)	176, 221, 284, 351
BseMI	GCAATG	2 cut(s)	141, 379
BseXI	GCAGC	1 cut(s)	769
BshFI	GGCC	4 cut(s)	214, 292, 511, 739
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	4 cut(s)	134, 220, 540, 851
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	176, 221, 284, 351
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	214, 292, 511, 739
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	133
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	3 cut(s)	105, 847, 968
BspACI	CCGC	1 cut(s)	660
BspANI	GGCC	4 cut(s)	214, 292, 511, 739
BspEI	TCCGGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	234, 697
BspPI	GGATC	2 cut(s)	842, 976
BsrDI	GCAATG	2 cut(s)	141, 379
BsrGI	TGTACA	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	157, 220, 236
BssMI	GATC	3 cut(s)	105, 847, 968
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	490, 583, 635, 767
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	2 cut(s)	623, 797
BstDSI	CCRYGG	1 cut(s)	157
BstEII	GGTNACC	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	53, 827
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	3 cut(s)	108, 850, 971
BstMBI	GATC	3 cut(s)	105, 847, 968
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstPI	GGTNACC	1 cut(s)	812
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	769
BstX2I	RGATCY	1 cut(s)	847
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	1 cut(s)	847
BsuRI	GGCC	4 cut(s)	214, 292, 511, 739
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	53, 827
Cac8I	GCNNGC	1 cut(s)	741
CfoI	GCGC	1 cut(s)	787
Cfr13I	GGNCC	6 cut(s)	131, 167, 212, 695, 759, 911
CseI	GACGC	2 cut(s)	350, 925
Csp6I	GTAC	1 cut(s)	567
CspCI	CAANNNNNGTGG	4 cut(s)	282, 317, 597, 632
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	2 cut(s)	623, 797
DpnI	GATC	3 cut(s)	107, 849, 970
DpnII	GATC	3 cut(s)	105, 847, 968
DrdI	GACNNNNNNGTC	1 cut(s)	922
DseDI	GACNNNNNNGTC	1 cut(s)	922
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
EciI	GGCGGA	1 cut(s)	649
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	5 cut(s)	131, 167, 695, 759, 911
Eco53kI	GAGCTC	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	112
EcoO109I	RGGNCCY	3 cut(s)	167, 212, 695
EcoO65I	GGTNACC	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	236
FaiI	YATR	8 cut(s)	10, 174, 247, 283, 333, 335, 987, 1006
FaqI	GGGAC	1 cut(s)	401
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	2 cut(s)	40, 814
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	3 cut(s)	47, 296, 647
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	1 cut(s)	783
HaeIII	GGCC	4 cut(s)	214, 292, 511, 739
HapII	CCGG	4 cut(s)	134, 220, 540, 851
HgaI	GACGC	2 cut(s)	350, 925
HhaI	GCGC	1 cut(s)	787
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	2 cut(s)	85, 840
HindII	GTYRAC	2 cut(s)	85, 840
HindIII	AAGCTT	2 cut(s)	680, 702
HinfI	GANTC	3 cut(s)	414, 656, 923
HpaII	CCGG	4 cut(s)	134, 220, 540, 851
HphI	GGTGA	3 cut(s)	542, 589, 782
Hpy166II	GTNNAC	4 cut(s)	85, 326, 493, 840
Hpy188I	TCNGA	4 cut(s)	105, 187, 432, 915
Hpy188III	TCNNGA	2 cut(s)	134, 440
Hpy8I	GTNNAC	4 cut(s)	85, 326, 493, 840
Hpy99I	CGWCG	2 cut(s)	713, 919
HpyAV	CCTTC	4 cut(s)	282, 495, 537, 568
HpyCH4III	ACNGT	4 cut(s)	490, 583, 635, 767
HpyCH4IV	ACGT	2 cut(s)	711, 882
HpyCH4V	TGCA	2 cut(s)	553, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	2 cut(s)	623, 797
HpySE526I	ACGT	2 cut(s)	711, 882
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	1 cut(s)	785
Kpn2I	TCCGGA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	105, 847, 968
LmnI	GCTCC	2 cut(s)	117, 232
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	2 cut(s)	59, 74
MaeI	CTAG	3 cut(s)	47, 296, 647
MaeII	ACGT	2 cut(s)	711, 882
MaeIII	GTNAC	3 cut(s)	530, 577, 812
MalI	GATC	3 cut(s)	107, 849, 970
MboI	GATC	3 cut(s)	105, 847, 968
MboII	GAAGA	5 cut(s)	22, 204, 667, 712, 953
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	5 cut(s)	94, 195, 462, 519, 773
MlyI	GAGTC	2 cut(s)	423, 932
MmeI	TCCRAC	3 cut(s)	157, 938, 970
MroI	TCCGGA	1 cut(s)	133
MseI	TTAA	3 cut(s)	41, 359, 753
MslI	CAYNNNNRTG	1 cut(s)	832
MspI	CCGG	4 cut(s)	134, 220, 540, 851
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	659
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	105, 847, 968
NlaIV	GGNNCC	2 cut(s)	234, 697
NmuCI	GTSAC	2 cut(s)	530, 577
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	656
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	2 cut(s)	422, 931
PpsI	GAGTC	2 cut(s)	422, 931
PpuMI	RGGWCCY	2 cut(s)	167, 695
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	2 cut(s)	167, 695
PspEI	GGTNACC	1 cut(s)	812
PspN4I	GGNNCC	2 cut(s)	234, 697
PspPI	GGNCC	6 cut(s)	131, 167, 212, 695, 759, 911
PspPPI	RGGWCCY	2 cut(s)	167, 695
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	832
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	41, 359, 753
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	3 cut(s)	105, 847, 968
Sau96I	GGNCC	6 cut(s)	131, 167, 212, 695, 759, 911
SchI	GAGTC	2 cut(s)	423, 932
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	59, 74
SinI	GGWCC	5 cut(s)	131, 167, 695, 759, 911
SmiMI	CAYNNNNRTG	1 cut(s)	832
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	5 cut(s)	94, 195, 462, 519, 773
SsiI	CCGC	1 cut(s)	660
SspMI	CTAG	3 cut(s)	47, 296, 647
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	4 cut(s)	490, 583, 635, 767
TaiI	ACGT	2 cut(s)	714, 885
TaqI	TCGA	4 cut(s)	108, 150, 591, 691
TasI	AATT	5 cut(s)	94, 195, 462, 519, 773
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	3 cut(s)	41, 359, 753
Tru9I	TTAA	3 cut(s)	41, 359, 753
TseFI	GTSAC	2 cut(s)	530, 577
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	2 cut(s)	530, 577
TspDTI	ATGAA	2 cut(s)	17, 885
TspGWI	ACGGA	3 cut(s)	245, 413, 966
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	5 cut(s)	131, 167, 695, 759, 911
XapI	RAATTY	2 cut(s)	195, 773
XspI	CTAG	3 cut(s)	47, 296, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.