Rorug01G0019800

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000674
Physical Location & Seq
Reverse (-)
3255574 .. 3258553
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0019800.1

Sequence Viewer

Length: 1107 bp
ATGGCTCTGCTACTAGTCCCTTTTGTACTTGCTCTCTCCTTCATCTCCACTAGTCCTGCCTTTGCAGTTGCGCCTAGGCCTCTTGAAGGACTCTTGGACAATGGAAATTTTGAAGAACCACCAAAACGAAGCAACCTCAAGAAAACAGTGCTCATAGGCAAAAATGCACTGCCCAAATGGGAAATCAATGGCTTTGTGGAGTACATCTCCGGCGGGCCTCAACCAGGCGGCATGTACTTTTCTGTAGCTCATGGTGTCCATGCAGTCAGGCTTGGCAATGAGGCCTCAATCTCTCAGACCATAAAGGTCAAACCAGGGTCTCTGTATGCCCTAACATTTGGGGCATCGAGAACTTGTGCACAAGAAGAGGTTCTGAGAGTATCAGTGCCTCCTCAGGCAGGAGACCTTCCTTTGCAGACTCTATACAGCAGTAATGGAGGTGATACTTATGCTTGGGGATTCAGAGCCACTTCTAACACGGCTAAAGTGACTTTCCACAATCCTGGAATTCAAGAAGACCCTGCTTGCGGTCCACTCTTGGATGCAATTGCTATCAAGGAGCTTCTCCCTGCACTGCCCACTAGAGGTAACCTGGTCAGAAATCCTGGTTTTGAGGAGGGACCCCATAGGCTATTCAACTCTTCCCATGGTGTACTTCTTCCTCCGAAACAACTAGATGCAACATCCCCAATTCCTGGCTGGATCATCGAGTCCCTTAAGGCCGTAAAGTTCATTGATGCCAAGCACTTTAATGTCCCATTTGGAAAAGCTGCAGTTGAGCTTGTTGCTGGGAGAGAGAGTGCTATTGCCCAGGTTCTTAGAACAGTTCCCAACAAGCTCTACAGTCTCTCATTCACTGTCGGTGACGCAAGGAACGGCTGCCACGGATCAATGATGGTCGAAGCATTTGCAGGCAAGGATACCTTGAAAGTTCCTTTCAACTCTCAAGGAAAAGGTGGTTTCAAGGCTGCCAGTTTCAAGTTCAAAGCAGCTTCATTCAGGACCAGAATTACATTCTTCAGTTCTTTCTACCACACCAGGACTGATGACTACGGTGCTCTTTGCGGACCCATCCTAGATGAAGTTCGGGTTTCTCCTATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

368

Amino Acids

39.51

Weight (kDa)

9.25

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 30 - 186 2.8e-68 Protein of unknown function (DUF642)
DUF642 PF04862 198 - 364 6.9e-15 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 695
AciI CCGC 4 cut(s) 213, 228, 528, 1065
AclWI GGATC 2 cut(s) 710, 895
AcsI RAATTY 2 cut(s) 106, 507
AcuI CTGAAG 1 cut(s) 1003
AfaI GTAC 4 cut(s) 27, 203, 236, 654
AfiI CCNNNNNNNGG 6 cut(s) 86, 224, 398, 527, 584, 695
AflII CTTAAG 1 cut(s) 716
AgsI TTSAA 9 cut(s) 86, 113, 512, 637, 928, 940, 964, 979, 985
AhlI ACTAGT 2 cut(s) 13, 50
AjnI CCWGG 8 cut(s) 223, 313, 502, 591, 604, 694, 810, 1037
AluBI AGCT 6 cut(s) 248, 562, 770, 781, 838, 992
AluI AGCT 6 cut(s) 248, 562, 770, 781, 838, 992
Alw21I GWGCWC 3 cut(s) 153, 361, 1060
Alw26I GTCTC 3 cut(s) 324, 396, 851
Alw44I GTGCAC 1 cut(s) 357
AlwI GGATC 2 cut(s) 710, 895
AoxI GGCC 4 cut(s) 77, 215, 282, 720
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 770, 879, 968, 989
ApoI RAATTY 2 cut(s) 106, 507
Asp700I GAANNNNTTC 1 cut(s) 369
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 5 cut(s) 215, 530, 620, 1002, 1067
AsuHPI GGTGA 2 cut(s) 452, 875
AvaII GGWCC 4 cut(s) 530, 620, 1002, 1067
AvrII CCTAGG 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 3 cut(s) 153, 361, 1060
BbvI GCAGC 4 cut(s) 757, 866, 955, 1001
BccI CCATC 2 cut(s) 889, 1079
BceAI ACGGC 3 cut(s) 495, 707, 892
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
BciVI GTATCC 1 cut(s) 913
BcoDI GTCTC 3 cut(s) 324, 396, 851
BcuI ACTAGT 2 cut(s) 13, 50
BfaI CTAG 6 cut(s) 14, 51, 75, 582, 674, 1076
BfmI CTRYAG 3 cut(s) 243, 771, 841
BfrI CTTAAG 1 cut(s) 716
BfuI GTATCC 1 cut(s) 913
BisI GCNGC 5 cut(s) 229, 771, 880, 969, 990
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 5 cut(s) 230, 772, 881, 970, 991
Bme1390I CCNGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
Bme18I GGWCC 4 cut(s) 530, 620, 1002, 1067
BmgT120I GGNCC 5 cut(s) 215, 530, 620, 1002, 1067
BmiI GGNNCC 3 cut(s) 621, 622, 1069
BmrFI CCNGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
BmsI GCATC 4 cut(s) 353, 532, 667, 727
BpiI GAAGAC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuEI CTTGAG 2 cut(s) 122, 930
BsaI GGTCTC 2 cut(s) 324, 396
BsaJI CCNNGG 5 cut(s) 74, 314, 646, 810, 883
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 224, 398, 527, 584, 695
Bse1I ACTGG 1 cut(s) 972
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
BseDI CCNNGG 5 cut(s) 74, 314, 646, 810, 883
BseGI GGATG 3 cut(s) 547, 683, 1071
BseLI CCNNNNNNNGG 6 cut(s) 86, 224, 398, 527, 584, 695
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 3 cut(s) 308, 365, 407
BseNI ACTGG 1 cut(s) 972
BseRI GAGGAG 2 cut(s) 381, 629
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 4 cut(s) 757, 866, 955, 1001
BseYI CCCAGC 1 cut(s) 788
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 4 cut(s) 79, 217, 284, 722
BsiHKAI GWGCWC 3 cut(s) 153, 361, 1060
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 4 cut(s) 2, 633, 697, 740
BslI CCNNNNNNNGG 6 cut(s) 86, 224, 398, 527, 584, 695
BsmAI GTCTC 3 cut(s) 324, 396, 851
BsmFI GGGAC 4 cut(s) 2, 633, 697, 740
BsnI GGCC 4 cut(s) 79, 217, 284, 722
Bso31I GGTCTC 2 cut(s) 324, 396
Bsp1286I GDGCHC 3 cut(s) 153, 361, 1060
Bsp143I GATC 2 cut(s) 702, 887
Bsp19I CCATGG 1 cut(s) 646
BspACI CCGC 4 cut(s) 213, 228, 528, 1065
BspANI GGCC 4 cut(s) 79, 217, 284, 722
BspCNI CTCAG 3 cut(s) 307, 366, 406
BspLI GGNNCC 3 cut(s) 621, 622, 1069
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 2 cut(s) 710, 895
BspTI CTTAAG 1 cut(s) 716
BspTNI GGTCTC 2 cut(s) 324, 396
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 972
BssECI CCNNGG 5 cut(s) 74, 314, 646, 810, 883
BssMI GATC 2 cut(s) 702, 887
BssT1I CCWWGG 2 cut(s) 74, 646
Bst2UI CCWGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
Bst4CI ACNGT 5 cut(s) 148, 826, 845, 859, 1055
Bst6I CTCTTC 2 cut(s) 360, 646
BstAFI CTTAAG 1 cut(s) 716
BstC8I GCNNGC 3 cut(s) 215, 526, 913
BstDEI CTNAG 5 cut(s) 294, 374, 393, 818, 1104
BstDSI CCRYGG 2 cut(s) 646, 883
BstEII GGTNACC 1 cut(s) 587
BstENI CCTNNNNNAGG 3 cut(s) 84, 222, 396
BstF5I GGATG 3 cut(s) 547, 683, 1071
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 705, 890
BstMAI GTCTC 3 cut(s) 324, 396, 851
BstMBI GATC 2 cut(s) 702, 887
BstNI CCWGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
BstNSI RCATGY 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 8 cut(s) 223, 313, 502, 591, 604, 694, 810, 1037
BstSFI CTRYAG 3 cut(s) 243, 771, 841
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 4 cut(s) 757, 866, 955, 1001
BstV2I GAAGAC 1 cut(s) 522
BstXI CCANNNNNNTGG 1 cut(s) 503
Bsu36I CCTNAGG 1 cut(s) 393
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 4 cut(s) 79, 217, 284, 722
BtgI CCRYGG 2 cut(s) 646, 883
BtsCI GGATG 3 cut(s) 547, 683, 1071
BtsI GCAGTG 2 cut(s) 167, 572
BtsIMutI CAGTG 5 cut(s) 153, 167, 390, 572, 855
Cac8I GCNNGC 3 cut(s) 215, 526, 913
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 5 cut(s) 215, 530, 620, 1002, 1067
CseI GACGC 1 cut(s) 875
CsiI ACCWGGT 1 cut(s) 591
Csp6I GTAC 4 cut(s) 26, 202, 235, 653
CviAII CATG 4 cut(s) 232, 251, 260, 647
CviQI GTAC 4 cut(s) 26, 202, 235, 653
DdeI CTNAG 5 cut(s) 294, 374, 393, 818, 1104
DpnI GATC 2 cut(s) 704, 889
DpnII GATC 2 cut(s) 702, 887
Eam1104I CTCTTC 2 cut(s) 360, 646
EarI CTCTTC 2 cut(s) 360, 646
Eco130I CCWWGG 2 cut(s) 74, 646
Eco147I AGGCCT 2 cut(s) 79, 284
Eco31I GGTCTC 2 cut(s) 324, 396
Eco47I GGWCC 4 cut(s) 530, 620, 1002, 1067
Eco57I CTGAAG 1 cut(s) 1003
Eco81I CCTNAGG 1 cut(s) 393
Eco91I GGTNACC 1 cut(s) 587
EcoNI CCTNNNNNAGG 3 cut(s) 84, 222, 396
EcoO109I RGGNCCY 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 507
EcoRII CCWGG 8 cut(s) 223, 313, 502, 591, 604, 694, 810, 1037
EcoT14I CCWWGG 2 cut(s) 74, 646
ErhI CCWWGG 2 cut(s) 74, 646
FaeI CATG 4 cut(s) 235, 254, 263, 650
FalI AAGNNNNNCTT 2 cut(s) 908, 940
FaqI GGGAC 4 cut(s) 2, 633, 697, 740
FatI CATG 4 cut(s) 231, 250, 259, 646
FauI CCCGC 1 cut(s) 206
Fnu4HI GCNGC 5 cut(s) 229, 771, 880, 969, 990
FokI GGATG 3 cut(s) 554, 670, 1058
Fsp4HI GCNGC 5 cut(s) 229, 771, 880, 969, 990
FspBI CTAG 6 cut(s) 14, 51, 75, 582, 674, 1076
GlaI GCGC 1 cut(s) 72
GluI GCNGC 5 cut(s) 229, 771, 880, 969, 990
GsaI CCCAGC 1 cut(s) 792
HaeIII GGCC 4 cut(s) 79, 217, 284, 722
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 875
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 235, 254, 263, 650
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 4 cut(s) 90, 418, 459, 710
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 452, 875
Hpy166II GTNNAC 3 cut(s) 359, 533, 653
Hpy188I TCNGA 5 cut(s) 297, 375, 464, 599, 666
Hpy188III TCNNGA 5 cut(s) 83, 139, 348, 512, 1000
Hpy8I GTNNAC 3 cut(s) 359, 533, 653
HpyAV CCTTC 3 cut(s) 49, 80, 416
HpyCH4III ACNGT 5 cut(s) 148, 826, 845, 859, 1055
HpyF3I CTNAG 5 cut(s) 294, 374, 393, 818, 1104
Hsp92II CATG 4 cut(s) 235, 254, 263, 650
HspAI GCGC 1 cut(s) 71
KflI GGGWCCC 1 cut(s) 620
Kzo9I GATC 2 cut(s) 702, 887
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 4 cut(s) 757, 866, 955, 1001
LweI GCATC 4 cut(s) 353, 532, 667, 727
MabI ACCWGGT 1 cut(s) 591
MaeI CTAG 6 cut(s) 14, 51, 75, 582, 674, 1076
MaeIII GTNAC 3 cut(s) 487, 587, 863
MalI GATC 2 cut(s) 704, 889
MboI GATC 2 cut(s) 702, 887
MboII GAAGA 6 cut(s) 125, 377, 527, 633, 650, 1009
MfeI CAATTG 1 cut(s) 546
MhlI GDGCHC 3 cut(s) 153, 361, 1060
MluCI AATT 5 cut(s) 106, 507, 546, 690, 1008
MlyI GAGTC 3 cut(s) 84, 412, 719
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 2 cut(s) 717, 750
MslI CAYNNNNRTG 1 cut(s) 750
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
NcoI CCATGG 1 cut(s) 646
NdeII GATC 2 cut(s) 702, 887
NlaIII CATG 4 cut(s) 235, 254, 263, 650
NlaIV GGNNCC 3 cut(s) 621, 622, 1069
NmuCI GTSAC 2 cut(s) 487, 863
NspI RCATGY 1 cut(s) 235
PceI AGGCCT 2 cut(s) 79, 284
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 459
PflMI CCANNNNNTGG 1 cut(s) 695
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 5 cut(s) 230, 772, 881, 970, 991
PleI GAGTC 3 cut(s) 84, 412, 718
PpsI GAGTC 3 cut(s) 84, 412, 718
PpuMI RGGWCCY 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 8 cut(s) 223, 313, 502, 591, 604, 694, 810, 1037
PspEI GGTNACC 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 788
PspGI CCWGG 8 cut(s) 223, 313, 502, 591, 604, 694, 810, 1037
PspN4I GGNNCC 3 cut(s) 621, 622, 1069
PspPI GGNCC 5 cut(s) 215, 530, 620, 1002, 1067
PspPPI RGGWCCY 1 cut(s) 620
PstI CTGCAG 1 cut(s) 775
RsaI GTAC 4 cut(s) 27, 203, 236, 654
RsaNI GTAC 4 cut(s) 26, 202, 235, 653
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 2 cut(s) 717, 750
SatI GCNGC 5 cut(s) 229, 771, 880, 969, 990
Sau3AI GATC 2 cut(s) 702, 887
Sau96I GGNCC 5 cut(s) 215, 530, 620, 1002, 1067
SchI GAGTC 3 cut(s) 84, 412, 719
ScrFI CCNGG 8 cut(s) 225, 315, 504, 593, 606, 696, 812, 1039
SduI GDGCHC 3 cut(s) 153, 361, 1060
SexAI ACCWGGT 1 cut(s) 591
SfaNI GCATC 4 cut(s) 353, 532, 667, 727
SfcI CTRYAG 3 cut(s) 243, 771, 841
SinI GGWCC 4 cut(s) 530, 620, 1002, 1067
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 3 cut(s) 137, 716, 945
SmoI CTYRAG 3 cut(s) 137, 716, 945
SpeI ACTAGT 2 cut(s) 13, 50
Sse9I AATT 5 cut(s) 106, 507, 546, 690, 1008
SseBI AGGCCT 2 cut(s) 79, 284
SsiI CCGC 4 cut(s) 213, 228, 528, 1065
SspMI CTAG 6 cut(s) 14, 51, 75, 582, 674, 1076
StuI AGGCCT 2 cut(s) 79, 284
StyD4I CCNGG 8 cut(s) 223, 313, 502, 591, 604, 694, 810, 1037
StyI CCWWGG 2 cut(s) 74, 646
TaaI ACNGT 5 cut(s) 148, 826, 845, 859, 1055
TaqI TCGA 3 cut(s) 347, 708, 900
TasI AATT 5 cut(s) 106, 507, 546, 690, 1008
TatI WGTACW 4 cut(s) 25, 201, 234, 652
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 2 cut(s) 717, 750
Tru9I TTAA 2 cut(s) 717, 750
TscAI CASTG 5 cut(s) 153, 174, 390, 579, 862
TseFI GTSAC 2 cut(s) 487, 863
TseI GCWGC 4 cut(s) 770, 879, 968, 989
Tsp45I GTSAC 2 cut(s) 487, 863
TspDTI ATGAA 4 cut(s) 31, 721, 984, 1095
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 5 cut(s) 153, 174, 390, 579, 862
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 716
VneI GTGCAC 1 cut(s) 357
VpaK11BI GGWCC 4 cut(s) 530, 620, 1002, 1067
XagI CCTNNNNNAGG 3 cut(s) 84, 222, 396
XapI RAATTY 2 cut(s) 106, 507
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmaJI CCTAGG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 6 cut(s) 14, 51, 75, 582, 674, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.