Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

8622115 .. 8622833

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCTCATCTATTTCTCAAGCAGAAGGTCTTTCACTTGGTGGTTTTGAACACCATGAGATTCCAGTACCAGTAGTTGGCCCGGAGAGTGTGGCGTTTGATTGTAGCGGAGCAGTCTATGCAGGGGTTGCCGATGGAAGGATCTTCAAATGGCTAGGGAGCCAATATGGATGGAGCGAGTTTGCCACAACTTCCCCATCTAGGCCGAGAGGATTGTGTGACGGTTCTACCAATAAAGACAATGAACCAATTTGTGGGAGACCTCTAGGCCTTAGGTTTGACCTAAAAACATGTGAGCTTTATATAGCCGATGCCTATTTCGGCCTCTTAAAGACGGGGCCTAACGGCGGCGTTGCACAAACGCTTGCAACTGAAGTAAATGGAACCCCTTTCAGGTTTACAAATGATGTGGATATTAATCCACAAACCGGAATGGTGTATTTCACAGATTCCAGCACAATTTATCAAAGACGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

160

Amino Acids

17.14

Weight (kDa)

4.91

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	14 - 51	1.3e-07	Strictosidine synthase-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	77, 254
AciI	CCGC	2 cut(s)	108, 348
AclWI	GGATC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	7 cut(s)	77, 138, 201, 254, 347, 393, 428
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	50, 148
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	6 cut(s)	3, 79, 203, 268, 322, 338
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	80, 338
AsuC2I	CCSGG	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	272
BccI	CCATC	3 cut(s)	128, 165, 205
BceAI	ACGGC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	3 cut(s)	155, 201, 266
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	80, 338
BmiI	GGNNCC	3 cut(s)	161, 339, 385
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	7 cut(s)	77, 138, 201, 254, 347, 393, 428
Bse1I	ACTGG	2 cut(s)	65, 71
Bse21I	CCTNAGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	417
BseGI	GGATG	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	7 cut(s)	77, 138, 201, 254, 347, 393, 428
BseNI	ACTGG	2 cut(s)	65, 71
BshFI	GGCC	6 cut(s)	5, 81, 205, 270, 324, 340
BsiSI	CCGG	2 cut(s)	83, 429
BslI	CCNNNNNNNGG	7 cut(s)	77, 138, 201, 254, 347, 393, 428
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	6 cut(s)	5, 81, 205, 270, 324, 340
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	108, 348
BspANI	GGCC	6 cut(s)	5, 81, 205, 270, 324, 340
BspLI	GGNNCC	3 cut(s)	161, 339, 385
BspPI	GGATC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	65, 71
BssMI	GATC	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	224
BstAPI	GCANNNNNTGC	2 cut(s)	119, 128
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	6 cut(s)	5, 81, 205, 270, 324, 340
BtsCI	GGATG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	80, 338
Csp6I	GTAC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	2 cut(s)	56, 291
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
DraIII	CACNNNGTG	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	393
Eco81I	CCTNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	338
FaeI	CATG	2 cut(s)	59, 294
FaiI	YATR	6 cut(s)	57, 120, 168, 292, 303, 305
FatI	CATG	2 cut(s)	55, 290
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	3 cut(s)	155, 201, 266
GluI	GCNGC	1 cut(s)	349
HaeIII	GGCC	6 cut(s)	5, 81, 205, 270, 324, 340
HapII	CCGG	2 cut(s)	83, 429
Hin1II	CATG	2 cut(s)	59, 294
HinfI	GANTC	2 cut(s)	61, 449
HpaII	CCGG	2 cut(s)	83, 429
Hpy166II	GTNNAC	1 cut(s)	399
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	2 cut(s)	20, 132
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	122, 356, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	59, 294
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	3 cut(s)	110, 159, 174
LpnPI	CCDG	7 cut(s)	78, 84, 96, 108, 379, 442, 466
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	155, 201, 266
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	136
MflI	RGATCY	1 cut(s)	141
MluCI	AATT	2 cut(s)	249, 459
MnlI	CCTC	4 cut(s)	16, 203, 273, 335
MseI	TTAA	2 cut(s)	329, 417
MspI	CCGG	2 cut(s)	83, 429
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	59, 294
NlaIV	GGNNCC	3 cut(s)	161, 339, 385
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	270
PciI	ACATGT	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	61, 449
PflMI	CCANNNNNTGG	2 cut(s)	77, 254
PkrI	GCNGC	1 cut(s)	350
PscI	ACATGT	1 cut(s)	290
PshBI	ATTAAT	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	161, 339, 385
PspPI	GGNCC	2 cut(s)	80, 338
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	329, 417
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	80, 338
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	6 cut(s)	31, 265, 278, 285, 300, 398
SfaNI	GCATC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	249, 459
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	2 cut(s)	108, 348
SspMI	CTAG	3 cut(s)	155, 201, 266
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	2 cut(s)	249, 459
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	61, 449
Tru1I	TTAA	2 cut(s)	329, 417
Tru9I	TTAA	2 cut(s)	329, 417
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	258
Van91I	CCANNNNNTGG	2 cut(s)	77, 254
VspI	ATTAAT	1 cut(s)	417
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	3 cut(s)	155, 201, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.