Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Reverse (-)

12289953 .. 12290919

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGTGTGAGATCAAGTTTCGTGGTTTTCTCGTTTTTCTTTTTGGTTACAATAGCCTCATCTATTTCTCAAGCAGAAGCTCTTTCAATTGGTGGTTTTGAACACCATGAAATTCCTGTTCCGGTAGTTGGCCCTGAGAGTGTGGCGTTTGACTGCAGCGAAGCAGCCTACGTCGGGGTTGCGGACGGGCGGATTTTTAAATGGATGGGCGGACCAACTTGTGGGAGACCCCTCGGCCTCAAGTTCCACCCCACCACATGCGAGCTTTACATAGCCGATGCCTATTTCGGGCTCTTGAGGACAGGACCTAACGGCGGGGTAGCCCGACAACTTGCAACTTCAGCAGAAGGAATCCCTTTTCGGTTTACAAATTCTGTGGATATTAATCCCGTAACTGGAATGGTTTATTTCACAGATTCAAGCTCGGTTTATCAAAGAAGGAATTGGGAACTAATGCGATATAATCCAAGTGCAAACCGCGTGGAAGTTTTGCTCCGTGGTTTGTCTTTTGCAAATGGTGTAGCTGTAAGTCTAGATGGTAATTTTGTGCTAGTAACCCAAACAACAAGCAAAAACATTCTAAGGTATTGGGTTCGAGGACCAAGAGCTACTAATTCAGGTATAGGAGAACTTTTTTTTTGGGTTGCAGAGAATGGTAATGGAAGAGCCTTGGATGGGCTTAATCCTATTAGCCATGCCCAAGAATTTCATCATAATCTTTGGATAGGTTCGATTGTCAACCCCTTTGTGGGCGTTGTTCGCAACATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

257

Amino Acids

28.15

Weight (kDa)

7.01

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	124 - 200	1.1e-19	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccII	CGCG	1 cut(s)	480
AciI	CCGC	5 cut(s)	182, 190, 210, 315, 478
AcsI	RAATTY	3 cut(s)	111, 370, 704
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	9 cut(s)	128, 174, 221, 288, 314, 395, 675, 748, 749
AgsI	TTSAA	3 cut(s)	87, 101, 420
AluBI	AGCT	5 cut(s)	80, 265, 423, 524, 608
AluI	AGCT	5 cut(s)	80, 265, 423, 524, 608
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	2 cut(s)	130, 235
ApeKI	GCWGC	2 cut(s)	156, 164
ApoI	RAATTY	3 cut(s)	111, 370, 704
AseI	ATTAAT	1 cut(s)	384
AspS9I	GGNCC	4 cut(s)	131, 212, 305, 599
AvaII	GGWCC	3 cut(s)	212, 305, 599
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	168, 176
BccI	CCATC	3 cut(s)	199, 530, 668
BceAI	ACGGC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	533, 551
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	2 cut(s)	157, 165
BlsI	GCNGC	2 cut(s)	158, 166
Bme18I	GGWCC	3 cut(s)	212, 305, 599
BmgT120I	GGNCC	4 cut(s)	131, 212, 305, 599
BmsI	GCATC	1 cut(s)	268
BpuEI	CTTGAG	3 cut(s)	54, 224, 316
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	232, 496, 669
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	9 cut(s)	128, 174, 221, 288, 314, 395, 675, 748, 749
Bse1I	ACTGG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	232, 496, 669
BseGI	GGATG	2 cut(s)	210, 679
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	9 cut(s)	128, 174, 221, 288, 314, 395, 675, 748, 749
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	168, 176
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	132, 237
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	9 cut(s)	128, 174, 221, 288, 314, 395, 675, 748, 749
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	132, 237
Bso31I	GGTCTC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	5 cut(s)	182, 190, 210, 315, 478
BspANI	GGCC	2 cut(s)	132, 237
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	232, 496, 669
BssMI	GATC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	669
Bst6I	CTCTTC	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	135, 581
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	2 cut(s)	210, 679
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 759
BstNSI	RCATGY	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	168, 176
BsuRI	GGCC	2 cut(s)	132, 237
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	210, 679
Cac8I	GCNNGC	1 cut(s)	263
Cfr13I	GGNCC	4 cut(s)	131, 212, 305, 599
CspCI	CAANNNNNGTGG	5 cut(s)	38, 357, 392, 462, 497
CviAII	CATG	3 cut(s)	107, 258, 695
DdeI	CTNAG	2 cut(s)	135, 581
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
EciI	GGCGGA	2 cut(s)	205, 225
Eco130I	CCWWGG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	3 cut(s)	212, 305, 599
Eco57I	CTGAAG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	3 cut(s)	110, 261, 698
FaiI	YATR	7 cut(s)	108, 259, 272, 462, 623, 696, 714
FatI	CATG	3 cut(s)	106, 257, 694
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	157, 165
FokI	GGATG	2 cut(s)	217, 686
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	157, 165
FspBI	CTAG	2 cut(s)	533, 551
GluI	GCNGC	2 cut(s)	157, 165
HaeIII	GGCC	2 cut(s)	132, 237
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	3 cut(s)	110, 261, 698
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	2 cut(s)	351, 416
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	366, 739
Hpy188III	TCNNGA	2 cut(s)	295, 533
Hpy8I	GTNNAC	2 cut(s)	366, 739
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	341, 432
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	156, 335, 473, 512, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 759
HpyF3I	CTNAG	2 cut(s)	135, 581
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	110, 261, 698
Kzo9I	GATC	1 cut(s)	11
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	498
LpnPI	CCDG	6 cut(s)	129, 135, 147, 288, 381, 603
Lsp1109I	GCAGC	2 cut(s)	168, 176
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	533, 551
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	46, 391, 553
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	675
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	7 cut(s)	87, 111, 370, 442, 541, 613, 704
MnlI	CCTC	5 cut(s)	67, 242, 248, 291, 590
MseI	TTAA	4 cut(s)	198, 384, 681, 772
MspI	CCGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	341, 759
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	3 cut(s)	110, 261, 698
NmeAIII	GCCGAG	1 cut(s)	213
NspI	RCATGY	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	351, 416
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	158, 166
PpuMI	RGGWCCY	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	305
PspPI	GGNCC	4 cut(s)	131, 212, 305, 599
PspPPI	RGGWCCY	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	658
SaqAI	TTAA	4 cut(s)	198, 384, 681, 772
SatI	GCNGC	2 cut(s)	157, 165
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	4 cut(s)	131, 212, 305, 599
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	3 cut(s)	212, 305, 599
SmlI	CTYRAG	3 cut(s)	69, 239, 295
SmoI	CTYRAG	3 cut(s)	69, 239, 295
Sse9I	AATT	7 cut(s)	87, 111, 370, 442, 541, 613, 704
SsiI	CCGC	5 cut(s)	182, 190, 210, 315, 478
SspMI	CTAG	2 cut(s)	533, 551
StyI	CCWWGG	1 cut(s)	669
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	595, 731
TasI	AATT	7 cut(s)	87, 111, 370, 442, 541, 613, 704
TfiI	GAWTC	2 cut(s)	351, 416
Tru1I	TTAA	4 cut(s)	198, 384, 681, 772
Tru9I	TTAA	4 cut(s)	198, 384, 681, 772
TseI	GCWGC	2 cut(s)	156, 164
TspDTI	ATGAA	2 cut(s)	123, 698
TspGWI	ACGGA	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	221
VpaK11BI	GGWCC	3 cut(s)	212, 305, 599
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	3 cut(s)	111, 370, 704
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	2 cut(s)	533, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.