Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Forward (+)

4589573 .. 4590547

Gene Structure 975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAATCAGCTCTTGTTACACTCTTCTTCTTCTTCTTCTTCTTCCTCTTTTTGTTTGTTCACCAAGCCCAAGGAGCATCTTTTTCACTCCCAAACCTAAACCATCATGAAATACCCATCCATGTACCGCAGCCCGAAAGCATTGCTTTTGACTGCAATGGCGCACCCTACGTGGGTGTGGCTGATGGCAGGATATTCAAGTGGCTAGGATACCCTTTTGGGTGGAGAGAATTCGCAGTCACCGCCTCCAATAGGCCGAGAGGAGTATGTGATTTAACAACCAACAAAGACAATGAACCGATATGCGGGAGGCCACTTGGTTTAAAATTCGACCTCACAACATGTGAACTGTATATCGCAGATGCCTATTTTGGGCTTCTGAAGACGGGACCAAATGGTGGAGTAGCTCAAATACTTGCGACATCTGCTGAAGGAGTTCCTTTCCGTTTCTTAAACGGTGTCGACATTGATCGCCAAAGTGGAATGGTGTACTTCACAGACACCAGTGCTATTTACCAGAGAAGAAATTGGGAATTGTCAGTTAGTACAGGTGATAAAACTGGAAGGTTAATGAGATATGATCCATGGACAAAGAATGTCACTGTGTTGCGTCATGACTTGTCTTTTGCAAACGGGGTGGCACTAAGCAAAGACGGTGATTTTGTGCTAGTAACCCAAACCACTGCAAAGAACATTTTGAGGTATTGGCTTCGAGGGCCTAGAGCCAACACTGTTGATATTTTTTTCCAACTGCAAGGAGCCCCGGACAATATCATCAGAAACATAAATGGAGAATTTTGGGTTGCAGAAAATAGTGCCGGAAAAGGTAAAGCAGTCAGGCTTGACGCTCAAGGAAACTTTCTAGACGTGGTGGATGGACTCAACCCTGTGAGTCATGTTGAGCAGCGTTATAGAAACCTTTGGATAGGATCTGTGGTTAATAAGTTTGTTGGGGTTATTCTTAATTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

324

Amino Acids

36.25

Weight (kDa)

8.3

Isoelectric Point (pI)

23.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	152 - 239	7.2e-30	Strictosidine synthase
SGL	PF08450	183 - 292	8.4e-11	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	462
AciI	CCGC	3 cut(s)	128, 243, 306
AclWI	GGATC	2 cut(s)	575, 937
AcsI	RAATTY	3 cut(s)	230, 326, 794
AcuI	CTGAAG	2 cut(s)	401, 450
AfaI	GTAC	3 cut(s)	126, 491, 547
AfiI	CCNNNNNNNGG	5 cut(s)	173, 252, 305, 372, 398
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	868
AluBI	AGCT	2 cut(s)	11, 407
AluI	AGCT	2 cut(s)	11, 407
AlwI	GGATC	2 cut(s)	575, 937
AoxI	GGCC	3 cut(s)	254, 311, 716
ApeKI	GCWGC	2 cut(s)	130, 904
ApoI	RAATTY	3 cut(s)	230, 326, 794
ArsI	GACNNNNNNTTYG	4 cut(s)	608, 640, 644, 676
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	389, 716
AsuC2I	CCSGG	1 cut(s)	764
AsuHPI	GGTGA	4 cut(s)	53, 232, 563, 668
AvaII	GGWCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	142, 916
BccI	CCATC	4 cut(s)	111, 125, 179, 869
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	764
BfaI	CTAG	4 cut(s)	206, 668, 720, 863
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	131, 905
BlsI	GCNGC	2 cut(s)	132, 906
Bme1390I	CCNGG	1 cut(s)	764
Bme18I	GGWCC	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	2 cut(s)	389, 716
BmiI	GGNNCC	2 cut(s)	390, 760
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	2 cut(s)	86, 352
BpiI	GAAGAC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	834
BpuMI	CCSGG	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	70, 584, 762
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 252, 305, 372, 398
Bse1I	ACTGG	2 cut(s)	504, 565
Bse3DI	GCAATG	2 cut(s)	141, 163
BseDI	CCNNGG	3 cut(s)	70, 584, 762
BseGI	GGATG	2 cut(s)	117, 880
BseLI	CCNNNNNNNGG	5 cut(s)	173, 252, 305, 372, 398
BseMI	GCAATG	2 cut(s)	141, 163
BseNI	ACTGG	2 cut(s)	504, 565
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	142, 916
BshFI	GGCC	3 cut(s)	256, 313, 718
BsiSI	CCGG	2 cut(s)	764, 819
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	5 cut(s)	173, 252, 305, 372, 398
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	256, 313, 718
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	3 cut(s)	469, 580, 929
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	3 cut(s)	128, 243, 306
BspANI	GGCC	3 cut(s)	256, 313, 718
BspHI	TCATGA	2 cut(s)	106, 613
BspLI	GGNNCC	2 cut(s)	390, 760
BspPI	GGATC	2 cut(s)	575, 937
BsrDI	GCAATG	2 cut(s)	141, 163
BsrI	ACTGG	2 cut(s)	504, 565
BssECI	CCNNGG	3 cut(s)	70, 584, 762
BssMI	GATC	3 cut(s)	469, 580, 929
BssT1I	CCWWGG	2 cut(s)	70, 584
Bst4CI	ACNGT	5 cut(s)	351, 458, 604, 656, 733
Bst6I	CTCTTC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	644
BstDSI	CCRYGG	1 cut(s)	584
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	117, 880
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	472, 583, 932
BstMBI	GATC	3 cut(s)	469, 580, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 242, 425, 715
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	762
BstV1I	GCAGC	2 cut(s)	142, 916
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	256, 313, 718
BtgI	CCRYGG	1 cut(s)	584
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	2 cut(s)	117, 880
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	4 cut(s)	511, 600, 681, 729
CciI	TCATGA	2 cut(s)	106, 613
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	389, 716
CseI	GACGC	2 cut(s)	599, 854
Csp6I	GTAC	3 cut(s)	125, 490, 546
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	6 cut(s)	107, 122, 342, 585, 614, 896
CviQI	GTAC	3 cut(s)	125, 490, 546
DdeI	CTNAG	1 cut(s)	644
DpnI	GATC	3 cut(s)	471, 582, 931
DpnII	GATC	3 cut(s)	469, 580, 929
DraI	TTTAAA	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	70, 584
Eco24I	GRGCYC	1 cut(s)	763
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	401, 450
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	70, 584
EcoT38I	GRGCYC	1 cut(s)	763
ErhI	CCWWGG	2 cut(s)	70, 584
FaeI	CATG	6 cut(s)	110, 125, 345, 588, 617, 899
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	6 cut(s)	106, 121, 341, 584, 613, 895
FauI	CCCGC	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	131, 905
FokI	GGATG	2 cut(s)	104, 887
FriOI	GRGCYC	1 cut(s)	763
Fsp4HI	GCNGC	2 cut(s)	131, 905
FspBI	CTAG	4 cut(s)	206, 668, 720, 863
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	131, 905
HaeIII	GGCC	3 cut(s)	256, 313, 718
HapII	CCGG	2 cut(s)	764, 819
HgaI	GACGC	2 cut(s)	599, 854
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	6 cut(s)	110, 125, 345, 588, 617, 899
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	879, 892
HpaII	CCGG	2 cut(s)	764, 819
HphI	GGTGA	4 cut(s)	53, 232, 563, 668
Hpy166II	GTNNAC	4 cut(s)	61, 347, 463, 490
Hpy188I	TCNGA	2 cut(s)	381, 779
Hpy188III	TCNNGA	3 cut(s)	107, 614, 863
Hpy8I	GTNNAC	4 cut(s)	61, 347, 463, 490
HpyAV	CCTTC	2 cut(s)	425, 558
HpyCH4III	ACNGT	5 cut(s)	351, 458, 604, 656, 733
HpyCH4IV	ACGT	2 cut(s)	171, 867
HpyCH4V	TGCA	5 cut(s)	156, 629, 686, 754, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 242, 425, 715
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	2 cut(s)	171, 867
Hsp92II	CATG	6 cut(s)	110, 125, 345, 588, 617, 899
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	469, 580, 929
LmnI	GCTCC	2 cut(s)	74, 758
LpnPI	CCDG	9 cut(s)	175, 517, 530, 534, 546, 777, 823, 832, 900
Lsp1109I	GCAGC	2 cut(s)	142, 916
LweI	GCATC	2 cut(s)	86, 352
MaeI	CTAG	4 cut(s)	206, 668, 720, 863
MaeII	ACGT	2 cut(s)	171, 867
MaeIII	GTNAC	4 cut(s)	16, 238, 598, 670
MalI	GATC	3 cut(s)	471, 582, 931
MboI	GATC	3 cut(s)	469, 580, 929
MboII	GAAGA	9 cut(s)	16, 19, 22, 25, 28, 31, 34, 394, 534
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	6 cut(s)	230, 326, 526, 533, 794, 964
MlyI	GAGTC	2 cut(s)	873, 901
MmeI	TCCRAC	1 cut(s)	772
MnlI	CCTC	7 cut(s)	56, 254, 256, 303, 344, 693, 707
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	6 cut(s)	275, 323, 452, 569, 939, 963
MspI	CCGG	2 cut(s)	764, 819
MspR9I	CCNGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	4 cut(s)	74, 242, 425, 715
NciI	CCSGG	1 cut(s)	764
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	469, 580, 929
NlaIII	CATG	6 cut(s)	110, 125, 345, 588, 617, 899
NlaIV	GGNNCC	2 cut(s)	390, 760
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	238, 598
NspI	RCATGY	1 cut(s)	345
PagI	TCATGA	2 cut(s)	106, 613
PciI	ACATGT	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	132, 906
PleI	GAGTC	2 cut(s)	873, 900
PpsI	GAGTC	2 cut(s)	873, 900
Ppu21I	YACGTR	1 cut(s)	172
PscI	ACATGT	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	390, 760
PspPI	GGNCC	2 cut(s)	389, 716
PsuI	RGATCY	1 cut(s)	929
RsaI	GTAC	3 cut(s)	126, 491, 547
RsaNI	GTAC	3 cut(s)	125, 490, 546
SalI	GTCGAC	1 cut(s)	461
SaqAI	TTAA	6 cut(s)	275, 323, 452, 569, 939, 963
SatI	GCNGC	2 cut(s)	131, 905
Sau3AI	GATC	3 cut(s)	469, 580, 929
Sau96I	GGNCC	2 cut(s)	389, 716
SchI	GAGTC	2 cut(s)	873, 901
ScrFI	CCNGG	1 cut(s)	764
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	2 cut(s)	86, 352
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
Sse9I	AATT	6 cut(s)	230, 326, 526, 533, 794, 964
SsiI	CCGC	3 cut(s)	128, 243, 306
SspMI	CTAG	4 cut(s)	206, 668, 720, 863
StyD4I	CCNGG	1 cut(s)	762
StyI	CCWWGG	2 cut(s)	70, 584
TaaI	ACNGT	5 cut(s)	351, 458, 604, 656, 733
TaiI	ACGT	2 cut(s)	174, 870
TaqI	TCGA	3 cut(s)	330, 462, 712
TasI	AATT	6 cut(s)	230, 326, 526, 533, 794, 964
TatI	WGTACW	2 cut(s)	489, 545
Tru1I	TTAA	6 cut(s)	275, 323, 452, 569, 939, 963
Tru9I	TTAA	6 cut(s)	275, 323, 452, 569, 939, 963
TscAI	CASTG	4 cut(s)	511, 607, 688, 736
TseFI	GTSAC	2 cut(s)	238, 598
TseI	GCWGC	2 cut(s)	130, 904
Tsp45I	GTSAC	2 cut(s)	238, 598
TspDTI	ATGAA	3 cut(s)	17, 123, 309
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	4 cut(s)	511, 607, 688, 736
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	250
XapI	RAATTY	3 cut(s)	230, 326, 794
XbaI	TCTAGA	1 cut(s)	862
XceI	RCATGY	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	4 cut(s)	206, 668, 720, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.