Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000674

Physical Location & Seq

Genomic Coordinates Forward (+)

5647689 .. 5648192

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG031500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAATCAGCTCTTGTTATTCTCTTCTTCTTCTGTTTGTCTGTTCACCAATCCCAAGGAGCATCTTTTTCACTCCCAAACCTAAACCACCATGAAATACCCATCCATGTACCACAGCCCGAAAGCATTACTTTCGACTGCAATGGCGCACCCTACGTGGGTGTGGCTGATGGCAGGATATTCAAGTGGCTAGGGTACCCTTTTGGGTGGAGAGAATTCGCAGTCACCGCTCCCAATAGGCCGAGAGCAGTATGTGATTTAACTACCAACAAAGACAATGAACCGATATGCGGGAGGCCACTTGGTTTAAAATTTGACCTCACAACATGTGAACTGTATATCGCAGATGCCTATTTTGGACTTCTAAAGACAGGACCAAATGGTGGAGTAGCTCAAATACTTGCGACATCTGCTGAAGGAGTTCCTTTCCGTTTCTTAAACGGTGTCGACATTGATCGACAAAGTGGAATGGTGTACTTCACAGACACCAGTGCTATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

167

Amino Acids

18.37

Weight (kDa)

5.73

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16620 FvH4_4g28601 FvH4_4g28630 FvH4_6g13920 FvH4_6g14070 FvH4_6g14080 FvH4_7g01710 FvH4_7g02310 FvH4_7g06670
malus_domestica	MD13G1052500.v1.1
prunus_persica	Prupe.1G299700_v2.0.a1
pyrus_communis	pycom13g04670
rosa_chinensis	RchiOBHm_Chr1g0318191 RchiOBHm_Chr1g0318201 RchiOBHm_Chr1g0318261 RchiOBHm_Chr3g0466961 RchiOBHm_Chr4g0436711 RchiOBHm_Chr4g0436721
rosa_laevigata	RLG00000006501 RLG00000006502 RLG00000024539 RLG00000024542 RLG00000030550 RLG00000030553
rosa_multiflora	Rmu_co8279603.1_g000001 Rmu_sc0001193.1_g000011 Rmu_sc0005106.1_g000006 Rmu_sc0007889.1_g000005 Rmu_sc0007889.1_g000007 Rmu_sc0008182.1_g000002 Rmu_sc0008191.1_g000001 Rmu_sc0008791.1_g000004 Rmu_sc0017805.1_g000001 Rmu_ssc0000308.1_g000002
rosa_roxburghii	Rroxscaffold_3G00259990 Rroxscaffold_4G00329460 Rroxscaffold_4G00329510 Rroxscaffold_5G00377790 Rroxscaffold_5G00377800 Rroxscaffold_6G00414030
rosa_rugosa	Rorug01G0019700 Rorug01G0019800 Rorug03G0084300 Rorug04G0295500 Rorug04G0295700 Rorug07G0027600
rosa_samantha	Rh1AG031500 Rh1AG031800 Rh1BG027100 Rh1BG027300 Rh1BG027400 Rh1CG030200 Rh1CG030300 Rh1DG039600 Rh1DG039700 Rh3AG132400 Rh3BG153500 Rh3CG153500 Rh3DG154500 Rh4AG349900 Rh4AG350000 Rh4BG358600 Rh4BG358700 Rh4CG373000 Rh4CG373100 Rh4DG167900 Rh4DG352800 Rh4DG352900
rosa_wichuraiana	Rw1G002530 Rw1G002540 Rw3G012510 Rw3G012530 Rw4G014450 Rw4G030610 Rw4G030620 Rw7G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	2 cut(s)	228, 291
AcsI	RAATTY	2 cut(s)	215, 311
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	3 cut(s)	111, 197, 476
AfiI	CCNNNNNNNGG	3 cut(s)	158, 290, 383
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	11, 392
AluI	AGCT	2 cut(s)	11, 392
AoxI	GGCC	2 cut(s)	239, 296
ApoI	RAATTY	2 cut(s)	215, 311
Asp700I	GAANNNNTTC	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	38, 217
AvaII	GGWCC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	195
BccI	CCATC	2 cut(s)	110, 164
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BfaI	CTAG	2 cut(s)	191, 502
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	71, 337
BsaAI	YACGTR	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 290, 383
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	158, 290, 383
BseMI	GCAATG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	241, 298
BshNI	GGYRCC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	158, 290, 383
BsnI	GGCC	2 cut(s)	241, 298
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	2 cut(s)	228, 291
BspANI	GGCC	2 cut(s)	241, 298
BspLI	GGNNCC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	336, 443
Bst6I	CTCTTC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 410
BstNSI	RCATGY	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	241, 298
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	496
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	110, 196, 475
CviAII	CATG	3 cut(s)	92, 107, 327
CviJI	RGCY	7 cut(s)	11, 118, 167, 190, 241, 298, 392
CviKI_1	RGCY	7 cut(s)	11, 118, 167, 190, 241, 298, 392
CviQI	GTAC	3 cut(s)	110, 196, 475
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	95, 110, 330
FaiI	YATR	6 cut(s)	93, 108, 253, 289, 328, 339
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	3 cut(s)	91, 106, 326
FauI	CCCGC	1 cut(s)	284
FblI	GTMKAC	1 cut(s)	447
FokI	GGATG	1 cut(s)	89
FspBI	CTAG	2 cut(s)	191, 502
GlaI	GCGC	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	241, 298
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	95, 110, 330
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HphI	GGTGA	2 cut(s)	38, 217
Hpy166II	GTNNAC	4 cut(s)	46, 332, 448, 475
Hpy8I	GTNNAC	4 cut(s)	46, 332, 448, 475
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	336, 443
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 410
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	95, 110, 330
HspAI	GCGC	1 cut(s)	147
KpnI	GGTACC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	59, 235
LpnPI	CCDG	2 cut(s)	160, 357
LweI	GCATC	2 cut(s)	71, 337
MaeI	CTAG	2 cut(s)	191, 502
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	456
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	1 cut(s)	454
MboII	GAAGA	3 cut(s)	16, 19, 22
MluCI	AATT	2 cut(s)	215, 311
MnlI	CCTC	2 cut(s)	288, 329
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	3 cut(s)	260, 308, 437
MwoI	GCNNNNNNNGC	2 cut(s)	227, 410
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	95, 110, 330
NlaIV	GGNNCC	1 cut(s)	197
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	330
PciI	ACATGT	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	420
PflMI	CCANNNNNTGG	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	157
PscI	ACATGT	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	374
RsaI	GTAC	3 cut(s)	111, 197, 476
RsaNI	GTAC	3 cut(s)	110, 196, 475
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	260, 308, 437
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	374
SetI	ASST	5 cut(s)	13, 84, 159, 321, 394
SfaNI	GCATC	2 cut(s)	71, 337
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	2 cut(s)	215, 311
SsiI	CCGC	2 cut(s)	228, 291
SspMI	CTAG	2 cut(s)	191, 502
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	336, 443
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	135, 447, 457
TasI	AATT	2 cut(s)	215, 311
TatI	WGTACW	1 cut(s)	474
Tru1I	TTAA	3 cut(s)	260, 308, 437
Tru9I	TTAA	3 cut(s)	260, 308, 437
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	17, 108, 294
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	2 cut(s)	215, 311
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	191, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.