RLG00000006501

strictosidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000674
Physical Location & Seq
Forward (+)
7742030 .. 7743970
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006501

Sequence Viewer

Length: 1038 bp
ATGAACCCTCCTCCTTTTGCTTCATTCTACTTGCTCCTGCCTTGTTTACTGATCATCCTAGTATCAACCTCGACATCCAAACCAGCATTAGCATTCTCCATTGCTAGCCTCCGGAAATACTACCAACTCGAGCTCCCTTATAACGTAGTCGGCCCCGAAAGCGTTGCGTTCGACTGCCGTGGAGAAGGACCTTATGTTGGGGTTTCAGATGGTAGAATTCTCAAATGGGAGGAACCGCACAACGGCTGGAGAGAGTTTGGCTACACTTCCCCGAATAGGAAGTTATGCGATGGCTCAACCAACAAGATAAATGAACCGATATGCGGAAGGCCATTGGGTCTAAAGTTTAACCCTACAACATGTGAACTGTATATAGCAGATGCCTATTTTGGACTCTTGAAGACGGGACCAAATGGTGGCCGTCCTCATCAACTCGCCACTTCTGCAGAAGGAGTCCCCTTCCATTTCTTAAATGCTTTGGACATCGATGACGAATCTGGAATGGTTTATTTTACGGACACTAGCCTTAATTTCCAAAGAAGTGTTTGGATATTGTCCATCATCTCCGGTGACAGAACTGGAAGGTTAATGCAATACGATCCTAGTACAAAGAAGGTGACTGTGTTGCTCAAGGGATTGGCATTTCCAAATGGTGTGGCTCTAACTAAGGACAAATCTTTCCTCCTCCTAGCCGAAACTGGCACGCTGAAAATCCTCAGGTTATGGCTTCGAGGACCCAAGTCTAATGCCTTGGAACTTTTTGCTCAACTAGTCGGGTTCCCAGATAACATCAAGAGAAACAACAATGGAGAATTCTGGGTTGCGATCAACAACGGAAGAGGAAGATCAATATCTCGGACTCTGCTAGGAGATCCTGTAGGAGCAAAGTTTGATGAAGAAGGAAACGTTTTGGAGGTGTTAGATGGAGAGGATAGTACGGCAGCGTTGCTTCAGTCTGTTAGTGAAGTTGAAGAACACAACGGAAAGTTGTGGATAGGATCGGTGGAAAATTCATATGTTGGTGTTGGCTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

346

Amino Acids

37.93

Weight (kDa)

5.71

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Str_synth PF03088 158 - 245 2e-29 Strictosidine synthase
SGL PF08450 164 - 279 3.3e-08 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 416
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 2 cut(s) 236, 324
AclI AACGTT 1 cut(s) 906
AclWI GGATC 3 cut(s) 593, 866, 1006
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 3 cut(s) 216, 812, 1009
AcuI CTGAAG 1 cut(s) 935
AfaI GTAC 2 cut(s) 607, 937
AfiI CCNNNNNNNGG 5 cut(s) 197, 242, 276, 323, 416
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 2 cut(s) 400, 971
AhlI ACTAGT 1 cut(s) 769
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 3 cut(s) 593, 866, 1006
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 3 cut(s) 151, 329, 418
ApeKI GCWGC 1 cut(s) 941
ApoI RAATTY 3 cut(s) 216, 812, 1009
AspS9I GGNCC 4 cut(s) 152, 188, 407, 734
AsuHPI GGTGA 2 cut(s) 581, 628
AsuNHI GCTAGC 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 3 cut(s) 188, 407, 734
AxyI CCTNAGG 1 cut(s) 716
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 953
BccI CCATC 4 cut(s) 203, 284, 566, 917
BceAI ACGGC 4 cut(s) 162, 259, 405, 954
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BclI TGATCA 1 cut(s) 51
BcuI ACTAGT 1 cut(s) 769
BfaI CTAG 7 cut(s) 59, 105, 522, 603, 689, 770, 866
BfmI CTRYAG 2 cut(s) 444, 876
BisI GCNGC 1 cut(s) 942
BlsI GCNGC 1 cut(s) 943
Bme18I GGWCC 3 cut(s) 188, 407, 734
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 4 cut(s) 152, 188, 407, 734
BmiI GGNNCC 5 cut(s) 154, 234, 408, 736, 779
BmsI GCATC 1 cut(s) 370
BmtI GCTAGC 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 850
BsaJI CCNNGG 2 cut(s) 178, 750
BsaWI WCCGGW 2 cut(s) 111, 566
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 861, 891
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 242, 276, 323, 416
Bse1I ACTGG 2 cut(s) 583, 703
Bse21I CCTNAGG 1 cut(s) 716
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 850
BseAI TCCGGA 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 178, 750
BseGI GGATG 2 cut(s) 54, 74
BseJI GATNNNNATC 1 cut(s) 850
BseLI CCNNNNNNNGG 5 cut(s) 197, 242, 276, 323, 416
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 730
BseNI ACTGG 2 cut(s) 583, 703
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 1 cut(s) 953
BshFI GGCC 3 cut(s) 153, 331, 420
BshVI ATCGAT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 112, 567
BslFI GGGAC 2 cut(s) 420, 440
BslI CCNNNNNNNGG 5 cut(s) 197, 242, 276, 323, 416
BsmFI GGGAC 2 cut(s) 420, 440
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 3 cut(s) 153, 331, 420
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 135
Bsp13I TCCGGA 1 cut(s) 111
Bsp143I GATC 6 cut(s) 51, 598, 825, 845, 871, 998
BspACI CCGC 2 cut(s) 236, 324
BspANI GGCC 3 cut(s) 153, 331, 420
BspCNI CTCAG 1 cut(s) 729
BspDI ATCGAT 1 cut(s) 486
BspEI TCCGGA 1 cut(s) 111
BspLI GGNNCC 5 cut(s) 154, 234, 408, 736, 779
BspMAI CTGCAG 1 cut(s) 448
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 3 cut(s) 593, 866, 1006
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 2 cut(s) 583, 703
BssECI CCNNGG 2 cut(s) 178, 750
BssMI GATC 6 cut(s) 51, 598, 825, 845, 871, 998
BssT1I CCWWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 369, 622
Bst6I CTCTTC 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 106, 704
BstDEI CTNAG 2 cut(s) 666, 716
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 54, 74
BstKTI GATC 6 cut(s) 54, 601, 828, 848, 874, 1001
BstMBI GATC 6 cut(s) 51, 598, 825, 845, 871, 998
BstMWI GCNNNNNNNGC 2 cut(s) 159, 443
BstNSI RCATGY 1 cut(s) 363
BstPAI GACNNNNGTC 1 cut(s) 739
BstSFI CTRYAG 2 cut(s) 444, 876
BstV1I GCAGC 1 cut(s) 953
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 871
BstYI RGATCY 1 cut(s) 871
Bsu15I ATCGAT 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 716
BsuRI GGCC 3 cut(s) 153, 331, 420
BsuTUI ATCGAT 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 54, 74
Cac8I GCNNGC 2 cut(s) 106, 704
Cfr13I GGNCC 4 cut(s) 152, 188, 407, 734
ClaI ATCGAT 1 cut(s) 486
Csp6I GTAC 2 cut(s) 606, 936
CspCI CAANNNNNGTGG 2 cut(s) 636, 671
CviAII CATG 1 cut(s) 360
CviQI GTAC 2 cut(s) 606, 936
DdeI CTNAG 2 cut(s) 666, 716
DpnI GATC 6 cut(s) 53, 600, 827, 847, 873, 1000
DpnII GATC 6 cut(s) 51, 598, 825, 845, 871, 998
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 3 cut(s) 188, 407, 734
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 935
Eco81I CCTNAGG 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 2 cut(s) 188, 734
EcoRI GAATTC 2 cut(s) 216, 812
EcoT14I CCWWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 1 cut(s) 363
FaqI GGGAC 2 cut(s) 420, 440
FatI CATG 1 cut(s) 359
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 942
FokI GGATG 2 cut(s) 41, 61
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 942
FspBI CTAG 7 cut(s) 59, 105, 522, 603, 689, 770, 866
GluI GCNGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 3 cut(s) 153, 331, 420
HapII CCGG 2 cut(s) 112, 567
Hin1II CATG 1 cut(s) 363
HinfI GANTC 4 cut(s) 393, 453, 494, 859
HpaII CCGG 2 cut(s) 112, 567
HphI GGTGA 2 cut(s) 581, 628
Hpy166II GTNNAC 2 cut(s) 47, 365
Hpy188I TCNGA 2 cut(s) 208, 858
Hpy188III TCNNGA 4 cut(s) 112, 397, 498, 793
Hpy8I GTNNAC 2 cut(s) 47, 365
HpyAV CCTTC 7 cut(s) 179, 321, 443, 469, 576, 607, 893
HpyCH4III ACNGT 2 cut(s) 369, 622
HpyCH4IV ACGT 2 cut(s) 144, 906
HpyCH4V TGCA 2 cut(s) 446, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 443
HpyF3I CTNAG 2 cut(s) 666, 716
HpySE526I ACGT 2 cut(s) 144, 906
Hsp92II CATG 1 cut(s) 363
Kpn2I TCCGGA 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 6 cut(s) 51, 598, 825, 845, 871, 998
LmnI GCTCC 3 cut(s) 39, 138, 881
Lsp1109I GCAGC 1 cut(s) 953
LweI GCATC 1 cut(s) 370
MaeI CTAG 7 cut(s) 59, 105, 522, 603, 689, 770, 866
MaeII ACGT 2 cut(s) 144, 906
MaeIII GTNAC 2 cut(s) 569, 616
MalI GATC 6 cut(s) 53, 600, 827, 847, 873, 1000
MboI GATC 6 cut(s) 51, 598, 825, 845, 871, 998
MboII GAAGA 5 cut(s) 412, 849, 855, 908, 983
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 4 cut(s) 216, 529, 812, 1009
MlyI GAGTC 3 cut(s) 387, 462, 853
MroI TCCGGA 1 cut(s) 111
MseI TTAA 4 cut(s) 348, 470, 528, 587
MspI CCGG 2 cut(s) 112, 567
Mva1269I GAATGC 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 159, 443
NdeI CATATG 1 cut(s) 1015
NdeII GATC 6 cut(s) 51, 598, 825, 845, 871, 998
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 5 cut(s) 154, 234, 408, 736, 779
NmuCI GTSAC 2 cut(s) 569, 616
NspI RCATGY 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 128
PciI ACATGT 1 cut(s) 359
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 494
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 1 cut(s) 943
PleI GAGTC 3 cut(s) 387, 461, 853
PpsI GAGTC 3 cut(s) 387, 461, 853
PpuMI RGGWCCY 2 cut(s) 188, 734
PscI ACATGT 1 cut(s) 359
PshAI GACNNNNGTC 1 cut(s) 739
PsiI TTATAA 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 135
Psp1406I AACGTT 1 cut(s) 906
Psp5II RGGWCCY 2 cut(s) 188, 734
PspN4I GGNNCC 5 cut(s) 154, 234, 408, 736, 779
PspPI GGNCC 4 cut(s) 152, 188, 407, 734
PspPPI RGGWCCY 2 cut(s) 188, 734
PspXI VCTCGAGB 1 cut(s) 128
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 871
RsaI GTAC 2 cut(s) 607, 937
RsaNI GTAC 2 cut(s) 606, 936
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 4 cut(s) 348, 470, 528, 587
SatI GCNGC 1 cut(s) 942
Sau3AI GATC 6 cut(s) 51, 598, 825, 845, 871, 998
Sau96I GGNCC 4 cut(s) 152, 188, 407, 734
SchI GAGTC 3 cut(s) 387, 462, 853
SduI GDGCHC 1 cut(s) 135
SetI ASST 9 cut(s) 71, 135, 147, 193, 587, 618, 722, 909, 918
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 2 cut(s) 444, 876
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 3 cut(s) 188, 407, 734
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 629
SmoI CTYRAG 2 cut(s) 128, 629
SpeI ACTAGT 1 cut(s) 769
Sse9I AATT 4 cut(s) 216, 529, 812, 1009
SsiI CCGC 2 cut(s) 236, 324
SspMI CTAG 7 cut(s) 59, 105, 522, 603, 689, 770, 866
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 2 cut(s) 369, 622
TaiI ACGT 2 cut(s) 147, 909
TaqI TCGA 5 cut(s) 71, 129, 171, 486, 730
TasI AATT 4 cut(s) 216, 529, 812, 1009
TatI WGTACW 1 cut(s) 605
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 4 cut(s) 348, 470, 528, 587
Tru9I TTAA 4 cut(s) 348, 470, 528, 587
TseFI GTSAC 2 cut(s) 569, 616
TseI GCWGC 1 cut(s) 941
Tsp45I GTSAC 2 cut(s) 569, 616
TspDTI ATGAA 5 cut(s) 12, 17, 327, 909, 1002
TspGWI ACGGA 3 cut(s) 530, 849, 996
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 3 cut(s) 188, 407, 734
XapI RAATTY 3 cut(s) 216, 812, 1009
XceI RCATGY 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 7 cut(s) 59, 105, 522, 603, 689, 770, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.