Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Forward (+)

10631926 .. 10634024

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTTGAAGGATTCACTTCTTGGCTTCTTTGTCGTAACCTTTTTCCTTCTTTGCTGGAACCCTACACCCATCAGAGCAGATGATTCCCCAGAACCGACTCACATCAGAGAAAATGGTTCACACCCGATACATGAGTGGCCACACCCGACACCCGACATCCACCATGATGCTGCAACTCCTGAGGTAATAGAATTTGGTTACGGGCAAGACGACCCGAAAGGACCACAACACTGGGGAGACCTTAAGAAAGAATGGAGCTTATGCAAGGAAGGGAAAAGGCAATCACCAATAGAGATATGGGAAAAGAATGCCTCCAAAGACATCACATCTTCAGACGATCTAGTAGTGAGTTATAAGCCTGCGAATGCAACTATCAAGAATGAAGAACATGCTATATCGGTTCTATTTGAGGGTGATGCTGGCTCAATTCGAGTCAACGGGACAGACTACTTCCTCAAACAATGCCATTGGCACCACCCCTCTGAGCATATCGTTAATGGCCGAAGGCATGATCTGGAATTACACATGGTTCACAAAACCAAGGACATGAGCAAAGTAGCTGTAATCGGATTCCTCTACAGACTTGGGGCACCTAATTCTTTTCTCACAAAGGTAACATCACAAATCACGTCTTTGATTGGTGTACAAAAGGGGATACCATTGGGAGTGACTGATCCAAGGAGGGTGAAGAAGGCTCATTTCCAAAAGAATATGGGGAAGCCGAAGAAGGCTGGCTCTAAATTTTTCAGATACATGGGCTCTCTCACTACCCCTCCTTGTGTTGAAGAGGTTATTTGGCACTTGAACAAGAAGGTACAATCTGCCTCCCCTGCACAAGTGGAGCTACTTCAGGATGCAGTGTTTGATTTTGCGAGGAACAACGCAAGACCAATTCAACCTCTAAACGGCCGAGGATACAAGCTCTATGGGGATTATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

314

Amino Acids

35.44

Weight (kDa)

8.52

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	73 - 304	4.2e-36	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	471, 589
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	3 cut(s)	137, 499, 907
AcsI	RAATTY	2 cut(s)	191, 740
AcuI	CTGAAG	2 cut(s)	315, 833
AfaI	GTAC	2 cut(s)	645, 816
AfiI	CCNNNNNNNGG	1 cut(s)	905
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	7, 785, 805, 896
AjiI	CACGTC	1 cut(s)	630
AluBI	AGCT	4 cut(s)	258, 560, 844, 922
AluI	AGCT	4 cut(s)	258, 560, 844, 922
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	668
AoxI	GGCC	3 cut(s)	137, 499, 907
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	191, 740
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	276, 425, 697
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	592
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BalI	TGGCCA	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	471, 589
BanII	GRGCYC	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	922
BciVI	GTATCC	2 cut(s)	648, 908
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	577
BfrI	CTTAAG	1 cut(s)	242
BfuI	GTATCC	2 cut(s)	648, 908
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	59, 473, 591
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	3 cut(s)	157, 406, 844
BmuI	ACTGGG	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	540, 677, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	757, 787
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse1I	ACTGG	1 cut(s)	236
Bse21I	CCTNAGG	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	540, 677, 910
BseGI	GGATG	2 cut(s)	156, 859
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMII	CTCAG	2 cut(s)	171, 474
BseNI	ACTGG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	592
BseX3I	CGGCCG	1 cut(s)	907
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	910
BshFI	GGCC	3 cut(s)	139, 501, 909
BshNI	GGYRCC	2 cut(s)	471, 589
BsiEI	CGRYCG	1 cut(s)	910
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	313, 370
BsnI	GGCC	3 cut(s)	139, 501, 909
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	592, 761
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	337, 511, 673
BspANI	GGCC	3 cut(s)	139, 501, 909
BspCNI	CTCAG	2 cut(s)	172, 475
BspLI	GGNNCC	3 cut(s)	59, 473, 591
BspPI	GGATC	1 cut(s)	668
BspT107I	GGYRCC	2 cut(s)	471, 589
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	540, 677, 910
BssMI	GATC	3 cut(s)	337, 511, 673
BssT1I	CCWWGG	2 cut(s)	540, 677
Bst6I	CTCTTC	1 cut(s)	780
BstAFI	CTTAAG	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	643
BstC8I	GCNNGC	3 cut(s)	360, 421, 733
BstDEI	CTNAG	2 cut(s)	180, 483
BstF5I	GGATG	2 cut(s)	156, 859
BstKTI	GATC	3 cut(s)	340, 514, 676
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	337, 511, 673
BstMCI	CGRYCG	1 cut(s)	910
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	577
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstZI	CGGCCG	1 cut(s)	907
Bsu36I	CCTNAGG	1 cut(s)	180
BsuI	GTATCC	2 cut(s)	648, 908
BsuRI	GGCC	3 cut(s)	139, 501, 909
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	156, 859
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	3 cut(s)	229, 864, 937
Cac8I	GCNNGC	3 cut(s)	360, 421, 733
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	644, 815
CviAII	CATG	7 cut(s)	131, 164, 389, 509, 526, 547, 754
CviQI	GTAC	2 cut(s)	644, 815
DdeI	CTNAG	2 cut(s)	180, 483
DpnI	GATC	3 cut(s)	339, 513, 675
DpnII	GATC	3 cut(s)	337, 511, 673
EaeI	YGGCCR	3 cut(s)	137, 499, 907
EagI	CGGCCG	1 cut(s)	907
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
EclXI	CGGCCG	1 cut(s)	907
Eco130I	CCWWGG	2 cut(s)	540, 677
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	221
Eco52I	CGGCCG	1 cut(s)	907
Eco57I	CTGAAG	2 cut(s)	315, 833
Eco81I	CCTNAGG	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	540, 677
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	2 cut(s)	540, 677
FaeI	CATG	7 cut(s)	134, 167, 392, 512, 529, 550, 757
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	7 cut(s)	130, 163, 388, 508, 525, 546, 753
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	143, 866
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	139, 501, 909
Hin1II	CATG	7 cut(s)	134, 167, 392, 512, 529, 550, 757
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	5 cut(s)	11, 83, 97, 432, 570
HphI	GGTGA	3 cut(s)	276, 425, 697
Hpy166II	GTNNAC	4 cut(s)	119, 436, 532, 644
Hpy188I	TCNGA	6 cut(s)	74, 107, 334, 484, 569, 749
Hpy188III	TCNNGA	4 cut(s)	179, 376, 515, 851
Hpy8I	GTNNAC	4 cut(s)	119, 436, 532, 644
HpyAV	CCTTC	6 cut(s)	56, 263, 498, 685, 721, 805
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	5 cut(s)	173, 264, 368, 833, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	2 cut(s)	180, 483
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	7 cut(s)	134, 167, 392, 512, 529, 550, 757
Kzo9I	GATC	3 cut(s)	337, 511, 673
LmnI	GCTCC	2 cut(s)	255, 841
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	3 cut(s)	157, 406, 844
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	4 cut(s)	34, 197, 613, 667
MalI	GATC	3 cut(s)	339, 513, 675
MboI	GATC	3 cut(s)	337, 511, 673
MboII	GAAGA	5 cut(s)	321, 395, 700, 736, 797
MhlI	GDGCHC	2 cut(s)	592, 761
MlsI	TGGCCA	1 cut(s)	139
MluCI	AATT	6 cut(s)	191, 426, 518, 595, 740, 891
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	91, 441
Mox20I	TGGCCA	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	139
MseI	TTAA	2 cut(s)	243, 495
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	139
MspCI	CTTAAG	1 cut(s)	242
Mva1269I	GAATGC	2 cut(s)	313, 370
MwoI	GCNNNNNNNGC	1 cut(s)	830
NdeII	GATC	3 cut(s)	337, 511, 673
NlaIII	CATG	7 cut(s)	134, 167, 392, 512, 529, 550, 757
NlaIV	GGNNCC	3 cut(s)	59, 473, 591
NmeAIII	GCCGAG	1 cut(s)	935
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	2 cut(s)	313, 370
PfeI	GAWTC	3 cut(s)	11, 83, 570
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	91, 440
PpsI	GAGTC	2 cut(s)	91, 440
PsiI	TTATAA	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	59, 473, 591
PspPI	GGNCC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	645, 816
RsaNI	GTAC	2 cut(s)	644, 815
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	243, 495
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	337, 511, 673
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	91, 441
SduI	GDGCHC	2 cut(s)	592, 761
SfaNI	GCATC	3 cut(s)	157, 406, 844
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	191, 426, 518, 595, 740, 891
SspMI	CTAG	1 cut(s)	341
StyI	CCWWGG	2 cut(s)	540, 677
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	430
TasI	AATT	6 cut(s)	191, 426, 518, 595, 740, 891
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	11, 83, 570
Tru1I	TTAA	2 cut(s)	243, 495
Tru9I	TTAA	2 cut(s)	243, 495
TscAI	CASTG	2 cut(s)	236, 864
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	236, 864
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	191, 740
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.