Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

15684528 .. 15686427

Gene Structure 1900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1089400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTTGGATCAAACCAAATCCACCTTGGCTTCATTGCTTTCACATTTTTTCTTCTCTTCTGGGATGCATCACCCATTACAGCTTCCAAATTTACCCGTGAGCTGGGACATCCGATAGAGTTTGAATTTGGTAACGGGGATAGAGGACCGGAACACTGGGGAGACCTCAAGAAAGAATGGAGTACATGTAAGTATGGAAAACTACAATCTCCAATAGATTTGAGGGATGATATTGCCCTCAAAGTTAACTCAAACTTTGATGAGCTTTCAATTAGTTACAAGCCTACCAAAGCCTTGATGAAGAATGAAGGTCATGCTATATCGGTTGTATGGGAGGGCGATGCAGGAGGAGTCATGATCAACGGCACAGAATACATTCTCCACCAATGCCATTGGCACGCCCCATCCGAGCACACCATGAATGGCATAAGGTATGATGCGGAGCTGCACATGATTCACAAAGACAAGAAAAATCGTGTAGCTGTCGTTGGATTCCTCTACAAAATTGGCAAGCCCAATCCCTTTATCTCAGAGGTGAAAAAGGCGATATCGTCTATGATTAAGAAACCGAAGGAGGTACCGTTGGGAGTAATTGATCCGAGGAAAATGAAAAAGGCTCAGAAGGCGCATCAGGATGCAGCAAAGAGGAAGATGAAGAAGAAGACCTCGAAATTTTACAGATACACGGGATCATACACAACCCCTCCTTGCACCGAAGGAGTTACTTGGACCATAAACAAACAGGTACATACTGTTTCACCATCACAAGTGGAGTTGCTTCACAAGGCCGTTTACAAGTATGCGGAGATGAATTCAAGACCGGTACAACCTCTCAATTACCGGGAGGTCAAGCTCCACGGTTCATCGTTCGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

293

Amino Acids

33.26

Weight (kDa)

9.54

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	49 - 284	2.8e-39	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	2 cut(s)	440, 803
AclWI	GGATC	3 cut(s)	16, 590, 697
AcsI	RAATTY	4 cut(s)	89, 125, 671, 811
AfaI	GTAC	4 cut(s)	184, 579, 747, 825
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	820
AgsI	TTSAA	3 cut(s)	125, 270, 816
AluBI	AGCT	6 cut(s)	83, 103, 265, 445, 482, 853
AluI	AGCT	6 cut(s)	83, 103, 265, 445, 482, 853
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	16, 590, 697
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	445, 638
ApoI	RAATTY	4 cut(s)	89, 125, 671, 811
AsiGI	ACCGGT	1 cut(s)	820
Asp700I	GAANNNNTTC	1 cut(s)	375
Asp718I	GGTACC	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	628
AspS9I	GGNCC	2 cut(s)	146, 729
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	3 cut(s)	63, 547, 750
AvaII	GGWCC	2 cut(s)	146, 729
BanI	GGYRCC	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	432, 650
BccI	CCATC	2 cut(s)	412, 769
BceAI	ACGGC	2 cut(s)	379, 773
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	446, 639
BlsI	GCNGC	2 cut(s)	447, 640
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	2 cut(s)	146, 729
BmgT120I	GGNCC	2 cut(s)	146, 729
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	842
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	6 cut(s)	55, 77, 331, 427, 625, 637
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	25, 599, 856
BsaWI	WCCGGW	2 cut(s)	148, 820
BsaXI	ACNNNNNCTCC	6 cut(s)	172, 202, 566, 596, 688, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	820
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	25, 599, 856
BseGI	GGATG	5 cut(s)	70, 109, 232, 404, 640
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	543, 632
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	432, 650
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	788
BshNI	GGYRCC	1 cut(s)	577
BshTI	ACCGGT	1 cut(s)	820
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	149, 821, 841
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	8, 357, 595, 689
BspACI	CCGC	2 cut(s)	440, 803
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	2 cut(s)	542, 631
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	3 cut(s)	16, 590, 697
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	820
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	820
BssECI	CCNNGG	3 cut(s)	25, 599, 856
BssMI	GATC	4 cut(s)	8, 357, 595, 689
BssT1I	CCWWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	582, 754, 860
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	399, 512
BstDEI	CTNAG	2 cut(s)	529, 618
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	5 cut(s)	70, 109, 232, 404, 640
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	4 cut(s)	11, 360, 598, 692
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	8, 357, 595, 689
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	840
BstV1I	GCAGC	2 cut(s)	432, 650
BstV2I	GAAGAC	1 cut(s)	668
BsuRI	GGCC	1 cut(s)	788
BtgI	CCRYGG	1 cut(s)	856
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	5 cut(s)	70, 109, 232, 404, 640
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	399, 512
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	628
Cfr10I	RCCGGY	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	146, 729
Csp6I	GTAC	4 cut(s)	183, 578, 746, 824
CspAI	ACCGGT	1 cut(s)	820
CviAII	CATG	5 cut(s)	186, 314, 355, 418, 451
CviQI	GTAC	4 cut(s)	183, 578, 746, 824
DdeI	CTNAG	2 cut(s)	529, 618
DpnI	GATC	4 cut(s)	10, 359, 597, 691
DpnII	GATC	4 cut(s)	8, 357, 595, 689
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	146, 729
EcoRI	GAATTC	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	5 cut(s)	189, 317, 358, 421, 454
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	5 cut(s)	185, 313, 354, 417, 450
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	446, 639
FokI	GGATG	5 cut(s)	77, 96, 239, 391, 647
Fsp4HI	GCNGC	2 cut(s)	446, 639
GlaI	GCGC	1 cut(s)	627
GluI	GCNGC	2 cut(s)	446, 639
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	3 cut(s)	149, 821, 841
HhaI	GCGC	1 cut(s)	628
Hin1II	CATG	5 cut(s)	189, 317, 358, 421, 454
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	351, 454, 492
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	3 cut(s)	149, 821, 841
HphI	GGTGA	3 cut(s)	63, 547, 750
Hpy166II	GTNNAC	2 cut(s)	247, 793
Hpy188I	TCNGA	5 cut(s)	114, 409, 532, 600, 621
Hpy188III	TCNNGA	4 cut(s)	169, 355, 632, 816
Hpy8I	GTNNAC	2 cut(s)	247, 793
HpyAV	CCTTC	4 cut(s)	302, 565, 616, 710
HpyCH4III	ACNGT	3 cut(s)	582, 754, 860
HpyCH4V	TGCA	5 cut(s)	68, 344, 448, 638, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	2 cut(s)	529, 618
Hsp92II	CATG	5 cut(s)	189, 317, 358, 421, 454
HspAI	GCGC	1 cut(s)	626
KpnI	GGTACC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	8, 357, 595, 689
LmnI	GCTCC	2 cut(s)	442, 858
LpnPI	CCDG	9 cut(s)	46, 89, 142, 162, 330, 617, 728, 834, 854
Lsp1109I	GCAGC	2 cut(s)	432, 650
LweI	GCATC	6 cut(s)	55, 77, 331, 427, 625, 637
MaeIII	GTNAC	3 cut(s)	131, 275, 721
MalI	GATC	4 cut(s)	10, 359, 597, 691
MboI	GATC	4 cut(s)	8, 357, 595, 689
MboII	GAAGA	7 cut(s)	44, 49, 313, 661, 667, 670, 673
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	8 cut(s)	89, 125, 270, 504, 591, 671, 811, 835
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	2 cut(s)	246, 561
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	3 cut(s)	149, 821, 841
MspR9I	CCNGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	1 cut(s)	623
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	4 cut(s)	8, 357, 595, 689
NlaIII	CATG	5 cut(s)	189, 317, 358, 421, 454
NlaIV	GGNNCC	1 cut(s)	579
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	189
PagI	TCATGA	1 cut(s)	354
PciI	ACATGT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	454, 492
PinAI	ACCGGT	1 cut(s)	820
PkrI	GCNGC	2 cut(s)	447, 640
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	146, 729
RsaI	GTAC	4 cut(s)	184, 579, 747, 825
RsaNI	GTAC	4 cut(s)	183, 578, 746, 824
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	246, 561
SatI	GCNGC	2 cut(s)	446, 639
Sau3AI	GATC	4 cut(s)	8, 357, 595, 689
Sau96I	GGNCC	2 cut(s)	146, 729
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	842
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	6 cut(s)	55, 77, 331, 427, 625, 637
SinI	GGWCC	2 cut(s)	146, 729
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	8 cut(s)	89, 125, 270, 504, 591, 671, 811, 835
SsiI	CCGC	2 cut(s)	440, 803
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	582, 754, 860
TaqI	TCGA	1 cut(s)	668
TasI	AATT	8 cut(s)	89, 125, 270, 504, 591, 671, 811, 835
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	454, 492
Tru1I	TTAA	2 cut(s)	246, 561
Tru9I	TTAA	2 cut(s)	246, 561
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	2 cut(s)	445, 638
TspDTI	ATGAA	8 cut(s)	22, 314, 321, 434, 623, 668, 824, 852
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	146, 729
XapI	RAATTY	4 cut(s)	89, 125, 671, 811
XceI	RCATGY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.