Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

10748933 .. 10749261

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTTAAATCAAAGCAAGCACCTCTTCAGTTCTTTGCTTTCACTCTCTTTCTTTTGTCCTGGCAATCCATCAAACCCGTCAGAAGCCAAGGAGCGGAAGAAATAGGGTATGATTATAATCAAGGGAGCCTTAAGGGACCAGAACACTGGGGAGAGCTCAAGGAAGAATGGAAGGCATGCAAAGATGGAGATTTACAATCGCCAATAGATTTGTTGGATTCAAATGCTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

79

Amino Acids

8.9

Weight (kDa)

5.73

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	2 cut(s)	77, 179
BciT130I	CCWGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	128, 138
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	128, 138
BspTI	CTTAAG	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	18, 178
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	18, 178
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	3 cut(s)	87, 129, 157
CviKI_1	RGCY	3 cut(s)	87, 129, 157
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	137
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	180
FaiI	YATR	3 cut(s)	111, 117, 178
FalI	AAGNNNNNCTT	4 cut(s)	9, 41, 114, 146
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	228
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	92, 126
LpnPI	CCDG	4 cut(s)	46, 73, 133, 153
MaeI	CTAG	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	95
MboII	GAAGA	3 cut(s)	17, 110, 176
MhlI	GDGCHC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	2 cut(s)	6, 132
MspCI	CTTAAG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	2 cut(s)	128, 138
NspI	RCATGY	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	128, 138
PspPI	GGNCC	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	6, 132
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	2 cut(s)	25, 159
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	131, 158
SmoI	CTYRAG	2 cut(s)	131, 158
SphI	GCATGC	1 cut(s)	180
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	6, 132
Tru9I	TTAA	2 cut(s)	6, 132
TscAI	CASTG	1 cut(s)	152
TspRI	CASTG	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.