Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

15797343 .. 15798886

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTTAAATCAAAGAAAGTCCATCTTCAGTTGTTTGCTTTCACTCTTTTTCTTCTGTCCTGGCACCCCATCAAACCCGTCAGAGGCGAAGGAGTGGAAGTAATGGAGTATAATTATAGGGAAGGGAGCCCCAAGGGACCAGAGCACTGGGGAGAGCTCAACGAAGAAATGGAGAAATGCAAAGATGGAAAATTACAATCGCCAATAGATTTGTTCGATTCGAATGCTAGAAAAGCAATCTCGAGAGTAGATGATCTTAACATGAGCTATAAGCCTTCAAAAGCAACTATGAAGCTTGAACACCATGCTATTTCGATTCAATGGGAGGGTGATGCTGGATCAATTCAAATAAATGGCACTGAATACTTGCTCAAAAGATGTCATTGGCACAGATCCTCTGAACATTTCATTAATGGCAGAAGTTATGATTTGGAATTGCACATGGTTCACCAAAGCCAGAACAATGATGTGGCTGTAGTCGCATTCCTATACCAAAGTGGCAATCCCGATCCTTTCCTGTCAAAGATAAGCAACGATGTATCCTCCCTAAGTGTTACAAAGGAGGCACGCTTGGGAGTGATTCATCCAAGTTTAATAAAATGGCCAAGCTCGCGATTTTATAGATATATAGGCTCACTCACGGCCCCTCCTTGCACTGAAGGAGTTATTTGGAGCGTAAGCGAAGAGCGTGGGATGAATGCAAGACCATTACAGCCTCTCAACAATCGAGACATCACGCTCATTGGTCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

251

Amino Acids

28.57

Weight (kDa)

7.19

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	45 - 229	1.1e-28	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccII	CGCG	1 cut(s)	613
AciI	CCGC	1 cut(s)	749
AclWI	GGATC	3 cut(s)	346, 387, 503
AcoI	YGGCCR	1 cut(s)	602
AcuI	CTGAAG	2 cut(s)	11, 678
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	279, 299, 320, 347
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	4 cut(s)	157, 267, 295, 609
AluI	AGCT	4 cut(s)	157, 267, 295, 609
Alw21I	GWGCWC	2 cut(s)	147, 159
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	3 cut(s)	346, 387, 503
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	2 cut(s)	602, 642
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	137, 643, 746
AsuHPI	GGTGA	2 cut(s)	341, 440
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	137, 746
BalI	TGGCCA	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	2 cut(s)	131, 159
Bbv12I	GWGCWC	2 cut(s)	147, 159
BccI	CCATC	3 cut(s)	30, 77, 179
BceAI	ACGGC	1 cut(s)	657
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	2 cut(s)	137, 746
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	137, 643, 746
BmiI	GGNNCC	4 cut(s)	65, 128, 138, 645
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 631, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	583, 699
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	604, 644
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	147, 159
BsiHKCI	CYCGRG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	3 cut(s)	229, 482, 703
BsnI	GGCC	2 cut(s)	604, 644
BsoBI	CYCGRG	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	131, 147, 159
Bsp143I	GATC	4 cut(s)	253, 338, 392, 508
Bsp68I	TCGCGA	1 cut(s)	613
BspACI	CCGC	1 cut(s)	749
BspANI	GGCC	2 cut(s)	604, 644
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	4 cut(s)	65, 128, 138, 645
BspPI	GGATC	3 cut(s)	346, 387, 503
BspQI	GCTCTTC	1 cut(s)	678
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	253, 338, 392, 508
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	678
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	568, 611
BstDEI	CTNAG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	583, 699
BstFNI	CGCG	1 cut(s)	613
BstKTI	GATC	4 cut(s)	256, 341, 395, 511
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	4 cut(s)	253, 338, 392, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 479, 610
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	604, 644
BtsCI	GGATG	2 cut(s)	583, 699
BtsIMutI	CAGTG	3 cut(s)	145, 357, 654
BtuMI	TCGCGA	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	568, 611
Cfr13I	GGNCC	3 cut(s)	137, 643, 746
CviAII	CATG	3 cut(s)	262, 305, 442
DdeI	CTNAG	1 cut(s)	548
DpnI	GATC	4 cut(s)	255, 340, 394, 510
DpnII	GATC	4 cut(s)	253, 338, 392, 508
EaeI	YGGCCR	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	2 cut(s)	131, 159
Eco47I	GGWCC	2 cut(s)	137, 746
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	11, 678
Eco88I	CYCGRG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	2 cut(s)	131, 159
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	265, 308, 445
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	261, 304, 441
FokI	GGATG	2 cut(s)	570, 706
FriOI	GRGCYC	2 cut(s)	131, 159
FspBI	CTAG	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	604, 644
Hin1II	CATG	3 cut(s)	265, 308, 445
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	218, 316, 580
HphI	GGTGA	2 cut(s)	341, 440
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	83, 400
Hpy188III	TCNNGA	5 cut(s)	241, 243, 506, 612, 728
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	4 cut(s)	83, 116, 285, 653
HpyCH4V	TGCA	4 cut(s)	180, 439, 654, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 479, 610
HpyF3I	CTNAG	1 cut(s)	548
Hsp92II	CATG	3 cut(s)	265, 308, 445
Kzo9I	GATC	4 cut(s)	253, 338, 392, 508
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	2 cut(s)	126, 672
LpnPI	CCDG	7 cut(s)	46, 73, 133, 153, 321, 470, 530
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	4 cut(s)	255, 340, 394, 510
MboI	GATC	4 cut(s)	253, 338, 392, 508
MboII	GAAGA	4 cut(s)	17, 44, 176, 695
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	3 cut(s)	131, 147, 159
MlsI	TGGCCA	1 cut(s)	604
MluCI	AATT	4 cut(s)	112, 191, 342, 434
MluNI	TGGCCA	1 cut(s)	604
MnlI	CCTC	7 cut(s)	77, 319, 406, 553, 556, 657, 726
Mox20I	TGGCCA	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	604
MseI	TTAA	4 cut(s)	6, 258, 411, 593
Msp20I	TGGCCA	1 cut(s)	604
MspR9I	CCNGG	1 cut(s)	61
Mva1269I	GAATGC	3 cut(s)	229, 482, 703
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	3 cut(s)	233, 479, 610
NdeII	GATC	4 cut(s)	253, 338, 392, 508
NlaIII	CATG	3 cut(s)	265, 308, 445
NlaIV	GGNNCC	4 cut(s)	65, 128, 138, 645
NruI	TCGCGA	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	678
PctI	GAATGC	3 cut(s)	229, 482, 703
PfeI	GAWTC	3 cut(s)	218, 316, 580
PshBI	ATTAAT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	4 cut(s)	65, 128, 138, 645
PspPI	GGNCC	3 cut(s)	137, 643, 746
PsuI	RGATCY	1 cut(s)	392
RruI	TCGCGA	1 cut(s)	613
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	6, 258, 411, 593
Sau3AI	GATC	4 cut(s)	253, 338, 392, 508
Sau96I	GGNCC	3 cut(s)	137, 643, 746
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	3 cut(s)	131, 147, 159
SetI	ASST	4 cut(s)	159, 269, 297, 611
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	2 cut(s)	137, 746
SlaI	CTCGAG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	4 cut(s)	112, 191, 342, 434
SsiI	CCGC	1 cut(s)	749
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	5 cut(s)	216, 221, 242, 314, 727
TasI	AATT	4 cut(s)	112, 191, 342, 434
TfiI	GAWTC	3 cut(s)	218, 316, 580
Tru1I	TTAA	4 cut(s)	6, 258, 411, 593
Tru9I	TTAA	4 cut(s)	6, 258, 411, 593
TscAI	CASTG	3 cut(s)	152, 364, 661
TspDTI	ATGAA	4 cut(s)	305, 397, 572, 710
TspRI	CASTG	3 cut(s)	152, 364, 661
VpaK11BI	GGWCC	2 cut(s)	137, 746
VspI	ATTAAT	1 cut(s)	411
XhoI	CTCGAG	1 cut(s)	241
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.