Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

16983079 .. 16984574

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1107800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTTGGATCAAAGCAAATCCACCTTGGCTTCATTGCATTCACACTGTTTCTTCTGTGCTGGGATGCATCACCCATTAGAGCTTCCAAATTTTCCAATGAGGATCCCATAGAATTTGTATACACTGAAGGGGACAAGAGAGGACCAGAATATTGGGGAGACCTTAAGGAAGAATGGAGCACATGTAAGGATGGAAAACTACAATCACCTATAGATTTGAGGGATGCCATTGCAGACAAAGTTAACTCAACTTTGGATCATCTTAAAATCCATTACAAGCCTACCCAAGCCTTGATGAAGAACGAAGGTCATGCTATTTCGGTTGTGTGGGAGGGTGATGCCGGAGGAGTCACGATCAACGGCACAGAATACTTGCTCCGGCAATGCCATTGGCACGCGCCCTCCGAGCACACCATCGATGGCAAAACCTATGATGTGGAACTGCACATGGTTCACAAAGACACGAGCAACACTCGTGTAGCTGTGGTTGGATTCCTCTACAAAATCGGCAAACCCAATCCTTTCATCACACAGATGAAAAAGGCTCAGAAGGGGAAGCAGGATGCGGCAAAGAGGAAGATGAAGAGGATGAGCTCAAAATTTTACAGATACATGGGATCGTTCACAACCCCTCCTTGCACCGAAGGAGTTACTTGGACCATAAACAAACAGTATGCAGAGATGAATTCAAGACCAGTACAACCTCTAAATGACCGGGAGGTCAAGCTCCACGGCTCATCGTTCAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

251

Amino Acids

28.49

Weight (kDa)

8.99

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	48 - 227	1.4e-32	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	5 cut(s)	16, 98, 111, 264, 625
AcsI	RAATTY	4 cut(s)	89, 113, 599, 685
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	699
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	690
AluBI	AGCT	4 cut(s)	83, 482, 594, 727
AluI	AGCT	4 cut(s)	83, 482, 594, 727
Alw21I	GWGCWC	3 cut(s)	182, 411, 596
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	5 cut(s)	16, 98, 111, 264, 625
ApoI	RAATTY	4 cut(s)	89, 113, 599, 685
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	143, 657
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	3 cut(s)	63, 198, 347
AvaII	GGWCC	2 cut(s)	143, 657
BamHI	GGATCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	596
BauI	CACGAG	2 cut(s)	463, 474
Bbv12I	GWGCWC	3 cut(s)	182, 411, 596
BccI	CCATC	3 cut(s)	185, 413, 422
BceAI	ACGGC	2 cut(s)	376, 748
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	2 cut(s)	143, 657
BmgT120I	GGNCC	2 cut(s)	143, 657
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	5 cut(s)	55, 77, 214, 328, 553
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
BpuMI	CCSGG	1 cut(s)	716
Bsa29I	ATCGAT	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	25, 730
BsaXI	ACNNNNNCTCC	6 cut(s)	169, 199, 386, 416, 616, 646
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	3 cut(s)	33, 228, 389
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	25, 730
BseGI	GGATG	5 cut(s)	70, 196, 229, 568, 594
BseMI	GCAATG	3 cut(s)	33, 228, 389
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	3 cut(s)	182, 411, 596
BsiSI	CCGG	3 cut(s)	342, 379, 715
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	182, 411, 596
Bsp143I	GATC	5 cut(s)	8, 103, 256, 354, 617
BspACI	CCGC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	559
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	5 cut(s)	16, 98, 111, 264, 625
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	33, 228, 389
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	2 cut(s)	25, 730
BssMI	GATC	5 cut(s)	8, 103, 256, 354, 617
BssNAI	GTATAC	1 cut(s)	121
BssSI	CACGAG	2 cut(s)	463, 474
BssT1I	CCWWGG	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	121
Bst2BI	CACGAG	2 cut(s)	463, 474
Bst4CI	ACNGT	2 cut(s)	48, 672
Bst6I	CTCTTC	1 cut(s)	578
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	5 cut(s)	70, 196, 229, 568, 594
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	5 cut(s)	11, 106, 259, 357, 620
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	5 cut(s)	8, 103, 256, 354, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	730
BtsCI	GGATG	5 cut(s)	70, 196, 229, 568, 594
BtsIMutI	CAGTG	2 cut(s)	44, 123
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	143, 657
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	4 cut(s)	183, 311, 448, 613
CviJI	RGCY	9 cut(s)	30, 83, 280, 290, 482, 545, 594, 727, 735
CviKI_1	RGCY	9 cut(s)	30, 83, 280, 290, 482, 545, 594, 727, 735
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	5 cut(s)	10, 105, 258, 356, 619
DpnII	GATC	5 cut(s)	8, 103, 256, 354, 617
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	143, 657
Eco53kI	GAGCTC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	4 cut(s)	186, 314, 451, 616
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	182, 310, 447, 612
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	5 cut(s)	77, 203, 236, 575, 601
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	567
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	567
GsaI	CCCAGC	1 cut(s)	64
HapII	CCGG	3 cut(s)	342, 379, 715
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	4 cut(s)	186, 314, 451, 616
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	348, 492
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	3 cut(s)	342, 379, 715
HphI	GGTGA	3 cut(s)	63, 198, 347
Hpy166II	GTNNAC	4 cut(s)	121, 244, 454, 624
Hpy188I	TCNGA	2 cut(s)	406, 549
Hpy188III	TCNNGA	2 cut(s)	352, 690
Hpy8I	GTNNAC	4 cut(s)	121, 244, 454, 624
HpyAV	CCTTC	4 cut(s)	122, 299, 544, 638
HpyCH4III	ACNGT	2 cut(s)	48, 672
HpyCH4V	TGCA	6 cut(s)	38, 68, 233, 445, 639, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	186, 314, 451, 616
HspAI	GCGC	1 cut(s)	398
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	8, 103, 256, 354, 617
LmnI	GCTCC	3 cut(s)	177, 381, 732
LpnPI	CCDG	7 cut(s)	46, 159, 355, 392, 545, 708, 728
LweI	GCATC	5 cut(s)	55, 77, 214, 328, 553
MaeIII	GTNAC	2 cut(s)	349, 649
MalI	GATC	5 cut(s)	10, 105, 258, 356, 619
MboI	GATC	5 cut(s)	8, 103, 256, 354, 617
MboII	GAAGA	5 cut(s)	44, 182, 310, 589, 595
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	3 cut(s)	182, 411, 596
MluCI	AATT	4 cut(s)	89, 113, 599, 685
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	3 cut(s)	165, 243, 264
MslI	CAYNNNNRTG	1 cut(s)	533
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	3 cut(s)	342, 379, 715
MspR9I	CCNGG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	716
NdeII	GATC	5 cut(s)	8, 103, 256, 354, 617
NlaIII	CATG	4 cut(s)	186, 314, 451, 616
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	186
PciI	ACATGT	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PscI	ACATGT	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	143, 657
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	3 cut(s)	165, 243, 264
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	5 cut(s)	8, 103, 256, 354, 617
Sau96I	GGNCC	2 cut(s)	143, 657
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	3 cut(s)	182, 411, 596
SfaNI	GCATC	5 cut(s)	55, 77, 214, 328, 553
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	143, 657
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	4 cut(s)	89, 113, 599, 685
SsiI	CCGC	1 cut(s)	566
SspI	AATATT	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	48, 672
TaqI	TCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	89, 113, 599, 685
TatI	WGTACW	1 cut(s)	697
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	165, 243, 264
Tru9I	TTAA	3 cut(s)	165, 243, 264
TscAI	CASTG	2 cut(s)	51, 130
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	6 cut(s)	22, 311, 514, 551, 596, 698
TspRI	CASTG	2 cut(s)	51, 130
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	143, 657
XapI	RAATTY	4 cut(s)	89, 113, 599, 685
XceI	RCATGY	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.