Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

10747863 .. 10748908

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGCTATAAGCCTTCAGACGCAACTATGAAGCATGATGGTTATGCTATGTCCATTCAATGGGAGGGTGATGCCGGGTCAATTCAAATAAATGGCACTGATTACTTCCTCAAAAGATGTCATTGGCACATATCATCTGAACATTTCATCGATGGCAGAAGTGTTAGTTCTACCAGTTACGATTTGGAATTGCATATGGTTCACCAAAGCCAGAACAACAATGTAGCTCTAGTCGCATTCCTATACCAGATTGGCAACCCCGATCCTTTCCTGTCAAAGATAAGCAAGGATGTATCATCCCTAGGAGGTACAGAGGTGGCATGGTTGGGAGTGACTGATCCAAGTTCAATCAAAGGGCCAAGCTCACGATTTTACAGATATATCGGCTCTCTCACGACCCCTCCTTGCACTGGAGGGGTTATTTGGACTAATGGGATGAATGCAAGACCATTACAGCCTCTTAACAATCGAGATATCACTCTCTTTGGTCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

166

Amino Acids

18.24

Weight (kDa)

6.27

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	5 - 143	3.1e-15	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	60
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	257, 332
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	60, 410
AgsI	TTSAA	3 cut(s)	59, 86, 348
AluBI	AGCT	3 cut(s)	6, 227, 363
AluI	AGCT	3 cut(s)	6, 227, 363
AlwI	GGATC	2 cut(s)	257, 332
AoxI	GGCC	1 cut(s)	356
AspA2I	CCTAGG	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	356, 488
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	80, 194
AvaII	GGWCC	1 cut(s)	488
AvrII	CCTAGG	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BccI	CCATC	2 cut(s)	32, 146
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	2 cut(s)	230, 302
BlnI	CCTAGG	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	356, 488
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 410
Bse1I	ACTGG	2 cut(s)	174, 415
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	295, 296, 441
BseLI	CCNNNNNNNGG	2 cut(s)	60, 410
BseNI	ACTGG	2 cut(s)	174, 415
BshFI	GGCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	60, 410
BsmI	GAATGC	2 cut(s)	236, 445
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	262, 337
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	150
BspPI	GGATC	2 cut(s)	257, 332
BsrI	ACTGG	2 cut(s)	174, 415
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	262, 337
BssT1I	CCWWGG	1 cut(s)	301
BstF5I	GGATG	3 cut(s)	295, 296, 441
BstKTI	GATC	2 cut(s)	265, 340
BstMBI	GATC	2 cut(s)	262, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	295, 296, 441
BtsIMutI	CAGTG	2 cut(s)	96, 408
Cfr13I	GGNCC	2 cut(s)	356, 488
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	2 cut(s)	35, 321
CviJI	RGCY	8 cut(s)	6, 13, 210, 227, 358, 363, 387, 457
CviKI_1	RGCY	8 cut(s)	6, 13, 210, 227, 358, 363, 387, 457
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	2 cut(s)	264, 339
DpnII	GATC	2 cut(s)	262, 337
Eco130I	CCWWGG	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	488
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	38, 324
FatI	CATG	2 cut(s)	34, 320
FauNDI	CATATG	1 cut(s)	195
FokI	GGATG	3 cut(s)	283, 302, 448
FspBI	CTAG	2 cut(s)	230, 302
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	38, 324
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	80, 194
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	19, 139
Hpy188III	TCNNGA	3 cut(s)	366, 394, 470
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	193, 408, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	38, 324
Kzo9I	GATC	2 cut(s)	262, 337
LpnPI	CCDG	6 cut(s)	88, 187, 224, 260, 284, 396
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	230, 302
MaeIII	GTNAC	2 cut(s)	176, 331
MalI	GATC	2 cut(s)	264, 339
MboI	GATC	2 cut(s)	262, 337
MluCI	AATT	2 cut(s)	81, 188
MnlI	CCTC	7 cut(s)	58, 119, 299, 307, 407, 411, 468
MseI	TTAA	1 cut(s)	462
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	2 cut(s)	236, 445
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	2 cut(s)	262, 337
NlaIII	CATG	2 cut(s)	38, 324
NmuCI	GTSAC	1 cut(s)	331
PctI	GAATGC	2 cut(s)	236, 445
PflMI	CCANNNNNTGG	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	356, 488
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	262, 337
Sau96I	GGNCC	2 cut(s)	356, 488
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	5 cut(s)	8, 229, 310, 318, 365
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	488
Sse9I	AATT	2 cut(s)	81, 188
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	230, 302
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	301
TaqI	TCGA	2 cut(s)	150, 469
TasI	AATT	2 cut(s)	81, 188
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	103, 415
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	44, 136, 452
TspRI	CASTG	2 cut(s)	103, 415
Van91I	CCANNNNNTGG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaJI	CCTAGG	1 cut(s)	301
XspI	CTAG	2 cut(s)	230, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.