Rmu_sc0002790.1_g000026

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002790.1
OG0001343
Physical Location & Seq
Reverse (-)
98013 .. 101164
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002790.1_g000026.1.cds

Sequence Viewer

Length: 972 bp
atgctatatctattattcattgcagacgtagtgatggttaaaacaaagaaagtccatcttcagttctttgctttcactctttttcttctgtcctggcaccccatcagacccgtcagtggccaaggagtgaaagaaatagggtatgattataggcaagggagccccaagggaccagagcactggggacagctcaaggaagaatggaaggaatgcaaagatggaaaattacaatcgccaatagatttgttggattcgaatgctcgaaaagaaatctcaagagtagatgatcttaacatgagctataagccttcaaatgcaaccatgaagcatgaaggttatgctatttcgattcaatgggagggtgatgctggttcaattcaaataaatggcactgattacttgctcaaaagatgtcattggcacagatcctctgaacatttcattaatggcagaagttatgatttggaattgcacatagttcaccaaagccagaacaacgatgtggctgtagtagcattcctataccaaagtggcaatcccgatcctttcctgtcaaagatccaacacatttcctctccttccctcctttcattgaagagattgttggctaagtatcgacaatctcgagatgaagatcttgaagagttgtgtacaactaatgctctggtggtagcagcagtcgctgaagctgaagcttcctccggatcacgacgacggggttctcaaccggggcgtgcaccgaatgaggagcggtttaggatgagtcacaatgtgttcaaccgcatctccagtgatctttgtggtaccgacccgtattgggtcaaaaaatcagatgctgcaggcaaagtcggactacttccccagcagaagctgacatgttccttaagaatgcttgcttatggtgcaggggcagatcaatgtgttgagtattgtcggatggcgaaatctacctctattcaggctctgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

323

Amino Acids

36.45

Weight (kDa)

8.71

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 2 cut(s) 96, 803
AccBSI CCGCTC 1 cut(s) 751
AccIII TCCGGA 1 cut(s) 701
AciI CCGC 2 cut(s) 751, 781
AclWI GGATC 4 cut(s) 420, 536, 553, 712
AcoI YGGCCR 1 cut(s) 118
AcuI CTGAAG 3 cut(s) 44, 705, 711
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 2 cut(s) 652, 805
AfiI CCNNNNNNNGG 2 cut(s) 116, 817
AflII CTTAAG 1 cut(s) 883
AflIII ACRYGT 1 cut(s) 875
AgsI TTSAA 7 cut(s) 312, 353, 375, 380, 595, 641, 778
AjnI CCWGG 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 5 cut(s) 190, 300, 689, 695, 871
AluI AGCT 5 cut(s) 190, 300, 689, 695, 871
Alw21I GWGCWC 2 cut(s) 180, 739
Alw44I GTGCAC 1 cut(s) 735
AlwI GGATC 4 cut(s) 420, 536, 553, 712
AlwNI CAGNNNCTG 4 cut(s) 683, 836, 871, 964
Ama87I CYCGRG 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 701
AoxI GGCC 1 cut(s) 118
ApaLI GTGCAC 1 cut(s) 735
ApeKI GCWGC 2 cut(s) 674, 836
AseI ATTAAT 1 cut(s) 444
Asp718I GGTACC 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 2 cut(s) 374, 473
AsuII TTCGAA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 739
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 2 cut(s) 96, 803
BanII GRGCYC 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 180, 739
BbvI GCAGC 2 cut(s) 686, 823
BccI CCATC 5 cut(s) 28, 63, 110, 212, 931
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 729
BfmI CTRYAG 2 cut(s) 507, 837
BfrI CTTAAG 1 cut(s) 883
BglII AGATCT 1 cut(s) 634
BisI GCNGC 2 cut(s) 675, 837
BlsI GCNGC 2 cut(s) 676, 838
Bme1390I CCNGG 2 cut(s) 94, 729
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 4 cut(s) 98, 161, 171, 805
BmrFI CCNGG 2 cut(s) 94, 729
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 355, 792, 823
BmuI ACTGGG 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 772
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 176, 259
BpuMI CCSGG 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 121, 165, 728
BsaWI WCCGGW 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 817
Bse1I ACTGG 2 cut(s) 185, 789
Bse3DI GCAATG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 701
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 121, 165, 728
BseGI GGATG 2 cut(s) 765, 942
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 2 cut(s) 116, 817
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 185, 789
BseRI GAGGAG 1 cut(s) 761
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 2 cut(s) 686, 823
BseYI CCCAGC 1 cut(s) 861
BsgI GTGCAG 1 cut(s) 924
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 2 cut(s) 96, 803
BsiHKAI GWGCWC 2 cut(s) 180, 739
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 2 cut(s) 702, 728
BslFI GGGAC 2 cut(s) 183, 198
BslI CCNNNNNNNGG 2 cut(s) 116, 817
BsmFI GGGAC 2 cut(s) 183, 198
BsmI GAATGC 4 cut(s) 215, 262, 515, 894
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 624
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 164, 180, 739
Bsp13I TCCGGA 1 cut(s) 701
Bsp1407I TGTACA 1 cut(s) 650
Bsp143I GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
BspACI CCGC 2 cut(s) 751, 781
BspANI GGCC 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 701
BspLI GGNNCC 4 cut(s) 98, 161, 171, 805
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 4 cut(s) 420, 536, 553, 712
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 2 cut(s) 96, 803
BspTI CTTAAG 1 cut(s) 883
BsrBI CCGCTC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 650
BsrI ACTGG 2 cut(s) 185, 789
BssECI CCNNGG 3 cut(s) 121, 165, 728
BssMI GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
BssT1I CCWWGG 2 cut(s) 121, 165
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 590, 636
BstAFI CTTAAG 1 cut(s) 883
BstAUI TGTACA 1 cut(s) 650
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 735, 841, 894
BstDEI CTNAG 1 cut(s) 609
BstF5I GGATG 2 cut(s) 765, 942
BstKTI GATC 8 cut(s) 289, 428, 544, 561, 637, 707, 796, 916
BstMBI GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
BstMWI GCNNNNNNNGC 3 cut(s) 512, 680, 902
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 879
BstSCI CCNGG 2 cut(s) 92, 727
BstSFI CTRYAG 2 cut(s) 507, 837
BstSLI GKGCMC 1 cut(s) 739
BstV1I GCAGC 2 cut(s) 686, 823
BstX2I RGATCY 3 cut(s) 425, 558, 634
BstXI CCANNNNNNTGG 1 cut(s) 180
BstYI RGATCY 3 cut(s) 425, 558, 634
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 765, 942
BtsIMutI CAGTG 4 cut(s) 121, 178, 390, 796
Cac8I GCNNGC 3 cut(s) 735, 841, 894
CaiI CAGNNNCTG 4 cut(s) 683, 836, 871, 964
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 651, 804
CviAII CATG 4 cut(s) 295, 322, 329, 876
CviQI GTAC 2 cut(s) 651, 804
DdeI CTNAG 1 cut(s) 609
DpnI GATC 8 cut(s) 288, 427, 543, 560, 636, 706, 795, 915
DpnII GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
DraIII CACNNNGTG 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 590, 636
EarI CTCTTC 2 cut(s) 590, 636
Eco130I CCWWGG 2 cut(s) 121, 165
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 3 cut(s) 44, 705, 711
Eco88I CYCGRG 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 2 cut(s) 121, 165
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 2 cut(s) 121, 165
FaeI CATG 4 cut(s) 298, 325, 332, 879
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 183, 198
FatI CATG 4 cut(s) 294, 321, 328, 875
Fnu4HI GCNGC 2 cut(s) 675, 837
FokI GGATG 2 cut(s) 772, 949
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 675, 837
GluI GCNGC 2 cut(s) 675, 837
GsaI CCCAGC 1 cut(s) 865
GsuI CTGGAG 1 cut(s) 772
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 702, 728
Hin1II CATG 4 cut(s) 298, 325, 332, 879
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 3 cut(s) 251, 349, 763
HpaII CCGG 2 cut(s) 702, 728
HphI GGTGA 2 cut(s) 374, 473
Hpy166II GTNNAC 3 cut(s) 481, 651, 737
Hpy188I TCNGA 6 cut(s) 107, 433, 832, 851, 936, 966
Hpy188III TCNNGA 7 cut(s) 276, 539, 624, 626, 638, 702, 708
Hpy8I GTNNAC 3 cut(s) 481, 651, 737
Hpy99I CGWCG 2 cut(s) 714, 717
HpyAV CCTTC 4 cut(s) 199, 318, 326, 588
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 7 cut(s) 23, 213, 317, 472, 737, 839, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 680, 902
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 298, 325, 332, 879
Kpn2I TCCGGA 1 cut(s) 701
KpnI GGTACC 1 cut(s) 807
Kzo9I GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
LmnI GCTCC 2 cut(s) 159, 748
Lsp1109I GCAGC 2 cut(s) 686, 823
LweI GCATC 3 cut(s) 355, 792, 823
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 764
MalI GATC 8 cut(s) 288, 427, 543, 560, 636, 706, 795, 915
MbiI CCGCTC 1 cut(s) 751
MboI GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
MboII GAAGA 6 cut(s) 50, 77, 209, 607, 644, 653
MflI RGATCY 3 cut(s) 425, 558, 634
MhlI GDGCHC 3 cut(s) 164, 180, 739
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 3 cut(s) 224, 375, 467
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 4 cut(s) 228, 586, 829, 914
MnlI CCTC 7 cut(s) 352, 439, 583, 593, 709, 739, 961
Mox20I TGGCCA 1 cut(s) 120
MroI TCCGGA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 120
MseI TTAA 4 cut(s) 39, 291, 444, 884
Msp20I TGGCCA 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 2 cut(s) 702, 728
MspR9I CCNGG 2 cut(s) 94, 729
Mva1269I GAATGC 4 cut(s) 215, 262, 515, 894
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 512, 680, 902
NciI CCSGG 1 cut(s) 729
NdeII GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
NlaIII CATG 4 cut(s) 298, 325, 332, 879
NlaIV GGNNCC 4 cut(s) 98, 161, 171, 805
NmuCI GTSAC 1 cut(s) 764
NspI RCATGY 1 cut(s) 879
NspV TTCGAA 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 624
PciI ACATGT 1 cut(s) 875
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PctI GAATGC 4 cut(s) 215, 262, 515, 894
PfeI GAWTC 2 cut(s) 251, 349
PkrI GCNGC 2 cut(s) 676, 838
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
PscI ACATGT 1 cut(s) 875
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 861
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 98, 161, 171, 805
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 4 cut(s) 683, 836, 871, 964
PsuI RGATCY 3 cut(s) 425, 558, 634
RsaI GTAC 2 cut(s) 652, 805
RsaNI GTAC 2 cut(s) 651, 804
SaqAI TTAA 4 cut(s) 39, 291, 444, 884
SatI GCNGC 2 cut(s) 675, 837
Sau3AI GATC 8 cut(s) 286, 425, 541, 558, 634, 704, 793, 913
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 2 cut(s) 94, 729
SduI GDGCHC 3 cut(s) 164, 180, 739
SetI ASST 8 cut(s) 30, 192, 302, 337, 691, 697, 873, 953
SfaNI GCATC 3 cut(s) 355, 792, 823
SfcI CTRYAG 2 cut(s) 507, 837
Sfr274I CTCGAG 1 cut(s) 624
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 624
SmlI CTYRAG 4 cut(s) 191, 274, 624, 883
SmoI CTYRAG 4 cut(s) 191, 274, 624, 883
Sse9I AATT 3 cut(s) 224, 375, 467
SsiI CCGC 2 cut(s) 751, 781
StyD4I CCNGG 2 cut(s) 92, 727
StyI CCWWGG 2 cut(s) 121, 165
TaiI ACGT 1 cut(s) 30
TaqI TCGA 5 cut(s) 254, 262, 347, 616, 625
TasI AATT 3 cut(s) 224, 375, 467
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 2 cut(s) 251, 349
Tru1I TTAA 4 cut(s) 39, 291, 444, 884
Tru9I TTAA 4 cut(s) 39, 291, 444, 884
TscAI CASTG 4 cut(s) 121, 185, 397, 796
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 2 cut(s) 674, 836
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 6 cut(s) 7, 338, 345, 430, 579, 645
TspRI CASTG 4 cut(s) 121, 185, 397, 796
Vha464I CTTAAG 1 cut(s) 883
VneI GTGCAC 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 444
XceI RCATGY 1 cut(s) 879
XhoI CTCGAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.