Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

17016158 .. 17017169

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1108000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATGGTCTTATGAATTTCTACAACCTTGAATGGGAAGGTGATGCTGGATCTATCCAAATCAACGGCACAGAATACTTCCTCAATGAATGCCATTGGCACACCCCATCCGAGCACACCATCAATGGCATAAGGTATGATTTGGAATTGCACGTGGTACATCGAAGCGCCGACAAGAACAGTGTAGCTGTAATTGCATTCCTATACCAAGTTGGTCCGCCCAATCCTTTTCTCTTAAAGGTGAACAAGGATATCCTGTCCATGATTGGTACAAAGGAGAAACACTTCGGAGTGATTAATCCAAGGGACATAATATGGCGCAGCTTAATATTTTACAGATACATAGGATCACTCACAACCCCTCCCTGTACGGAAGGAGTTATTTGGATGGTAAACGAAAGGGTAAATATTGTTTCAAGAGAACAACTGGAGTTACTTAAACAAGTTGTTGATGATGTAAGTCACCTTACCTTTTTAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

162

Amino Acids

18.58

Weight (kDa)

5.86

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	25 - 152	6.8e-25	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	58, 355
AcsI	RAATTY	1 cut(s)	16
AcvI	CACGTG	1 cut(s)	154
AfaI	GTAC	3 cut(s)	159, 271, 370
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	32, 417
AluBI	AGCT	2 cut(s)	188, 324
AluI	AGCT	2 cut(s)	188, 324
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	58, 355
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	16
AseI	ATTAAT	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	170, 321
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	53, 253, 455
AvaII	GGWCC	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	333
BccI	CCATC	3 cut(s)	115, 128, 382
BceAI	ACGGC	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	107, 393
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	2 cut(s)	95, 197
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	50, 347
BspACI	CCGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	58, 355
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	2 cut(s)	50, 347
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	107, 393
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 321
BstKTI	GATC	2 cut(s)	53, 350
BstMBI	GATC	2 cut(s)	50, 347
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	107, 393
BtsIMutI	CAGTG	1 cut(s)	187
CfoI	GCGC	2 cut(s)	170, 321
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	158, 270, 369
CviAII	CATG	2 cut(s)	5, 262
CviJI	RGCY	2 cut(s)	188, 324
CviKI_1	RGCY	2 cut(s)	188, 324
CviQI	GTAC	3 cut(s)	158, 270, 369
DpnI	GATC	2 cut(s)	52, 349
DpnII	GATC	2 cut(s)	50, 347
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	215
Eco72I	CACGTG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	2 cut(s)	8, 265
FaiI	YATR	9 cut(s)	6, 14, 131, 138, 205, 263, 311, 316, 344
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	4, 261
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	94, 400
Fsp4HI	GCNGC	1 cut(s)	322
GlaI	GCGC	2 cut(s)	169, 320
GluI	GCNGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	449
HaeII	RGCGCY	1 cut(s)	171
HhaI	GCGC	2 cut(s)	170, 321
Hin1II	CATG	2 cut(s)	8, 265
Hin6I	GCGC	2 cut(s)	168, 319
HinP1I	GCGC	2 cut(s)	168, 319
HphI	GGTGA	3 cut(s)	53, 253, 455
Hpy166II	GTNNAC	2 cut(s)	244, 394
Hpy188I	TCNGA	2 cut(s)	112, 290
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	2 cut(s)	244, 394
HpyAV	CCTTC	2 cut(s)	32, 368
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	4, 151, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	8, 265
HspAI	GCGC	2 cut(s)	168, 319
Kzo9I	GATC	2 cut(s)	50, 347
LpnPI	CCDG	4 cut(s)	33, 269, 379, 413
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	432, 461
MalI	GATC	2 cut(s)	52, 349
MboI	GATC	2 cut(s)	50, 347
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	16, 146, 192, 477
MnlI	CCTC	2 cut(s)	92, 372
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	5 cut(s)	236, 297, 326, 438, 476
Mva1269I	GAATGC	2 cut(s)	95, 197
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	50, 347
NlaIII	CATG	2 cut(s)	8, 265
NmuCI	GTSAC	1 cut(s)	461
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	2 cut(s)	95, 197
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	323
PmaCI	CACGTG	1 cut(s)	154
PmlI	CACGTG	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	297
PspCI	CACGTG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	3 cut(s)	159, 271, 370
RsaNI	GTAC	3 cut(s)	158, 270, 369
SaqAI	TTAA	5 cut(s)	236, 297, 326, 438, 476
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	2 cut(s)	50, 347
Sau96I	GGNCC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	9 cut(s)	30, 43, 137, 156, 190, 243, 326, 468, 473
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	4 cut(s)	16, 146, 192, 477
SsiI	CCGC	1 cut(s)	218
SspI	AATATT	2 cut(s)	330, 409
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	16, 146, 192, 477
Tru1I	TTAA	5 cut(s)	236, 297, 326, 438, 476
Tru9I	TTAA	5 cut(s)	236, 297, 326, 438, 476
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	29, 102
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.