Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00172

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Forward (+)

2295 .. 6009

Gene Structure 3715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTTGTATCAAAGGAATCCCTTCTTGGTTTCATTGTTTTTACCTTTTTCCTTCTTTGCTGGAACCCGACACCCATCAGAGCAAACGACGATGGGGAAGTAGACTTTGATTATCGGGAAGACCACCCGAGAGGACCACAACACTGGGGATACCTTAAGAAAGAATGGAGCTTATGCAAGGATGGAAAAAGGCAATCACCAATAGAGATATGGGAAAAGAATGCCACCAAAGACATCACAGATTCAAAGGATCTTATAGTGAGTTATAAGCCTGCAAATGCAACTATCAAAAATGAAGAACATGCTATATCGGTTTTATGGGAGGGTGATGCTGGCTCAATTGAAATCAATGGCACAACCTACTTCCTCAAACAATGTCATTGGCACCACCCCTCTGAGCATGTCGTTAATGGCAGAAGGTTTGATCTGGAATTGCACATGGTTCACAAAACTCAGGACATGAACAAAATAGCTGTTATCGGATTCCTCTACAACTTTGGTGAACCTAATTCTTTTCTCACAAAGGTGACAGGACACATCACTTCTTTGACTGATGTACAAAAGGGGATACCCTTGGGAGTGCTTGATCCAAGGAAGGTGAAAAAGGGTCAACTCCATTACAAGATTGCGAAGCCAGAAAAGGCTGGCTCTAAATTTTACAGATACATGGGCTCTCTCACAACCCCTCCTTGTGCTGAAGAGGTTATTTGGCACATAAACAAAAAGGTACAAACTGCTTCGATAGAACAAGTGAAGCTACTTCAAGATGCAGTTTTTGATTTTGCGGCGAACAACGCAAGGCCATTACAACCTCTCAACGGCCGAGGAATCAAGCTCTATGGGGACTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

284

Amino Acids

32.5

Weight (kDa)

8.21

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	45 - 278	7.9e-39	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	785
AclWI	GGATC	2 cut(s)	258, 581
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	558, 729
AfiI	CCNNNNNNNGG	1 cut(s)	818
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	246, 344, 764
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	171, 473, 757, 835
AluI	AGCT	4 cut(s)	171, 473, 757, 835
AlwI	GGATC	2 cut(s)	258, 581
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	800, 820
ApoI	RAATTY	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	5 cut(s)	189, 338, 512, 538, 610
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	3 cut(s)	83, 86, 176
BceAI	ACGGC	1 cut(s)	835
BciVI	GTATCC	2 cut(s)	143, 561
BfrI	CTTAAG	1 cut(s)	155
BfuI	GTATCC	2 cut(s)	143, 561
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	65, 386
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	319, 757
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	573, 590, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	818
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	573, 590, 823
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	818
BseMII	CTCAG	2 cut(s)	387, 467
BseNI	ACTGG	1 cut(s)	149
BseX3I	CGGCCG	1 cut(s)	820
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	802, 822
BshNI	GGYRCC	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	818
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	802, 822
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	3 cut(s)	250, 424, 586
BspACI	CCGC	1 cut(s)	785
BspANI	GGCC	2 cut(s)	802, 822
BspCNI	CTCAG	2 cut(s)	388, 466
BspLI	GGNNCC	2 cut(s)	65, 386
BspPI	GGATC	2 cut(s)	258, 581
BspT107I	GGYRCC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	573, 590, 823
BssMI	GATC	3 cut(s)	250, 424, 586
BssT1I	CCWWGG	2 cut(s)	573, 590
Bst6I	CTCTTC	1 cut(s)	693
BstAFI	CTTAAG	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	556
BstC8I	GCNNGC	3 cut(s)	273, 334, 646
BstDEI	CTNAG	2 cut(s)	396, 453
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	253, 427, 589
BstMBI	GATC	3 cut(s)	250, 424, 586
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNSI	RCATGY	2 cut(s)	305, 404
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	820
BsuI	GTATCC	2 cut(s)	143, 561
BsuRI	GGCC	2 cut(s)	802, 822
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	273, 334, 646
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	557, 728
CviAII	CATG	5 cut(s)	302, 401, 439, 460, 667
CviQI	GTAC	2 cut(s)	557, 728
DdeI	CTNAG	2 cut(s)	396, 453
DpnI	GATC	3 cut(s)	252, 426, 588
DpnII	GATC	3 cut(s)	250, 424, 586
EaeI	YGGCCR	1 cut(s)	820
EagI	CGGCCG	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EclXI	CGGCCG	1 cut(s)	820
Eco130I	CCWWGG	2 cut(s)	573, 590
Eco24I	GRGCYC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	820
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	573, 590
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	2 cut(s)	573, 590
FaeI	CATG	5 cut(s)	305, 404, 442, 463, 670
FatI	CATG	5 cut(s)	301, 400, 438, 459, 666
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	786
GluI	GCNGC	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	802, 822
Hin1II	CATG	5 cut(s)	305, 404, 442, 463, 670
HincII	GTYRAC	1 cut(s)	611
HindII	GTYRAC	1 cut(s)	611
HinfI	GANTC	4 cut(s)	17, 242, 483, 828
HphI	GGTGA	5 cut(s)	189, 338, 512, 538, 610
Hpy166II	GTNNAC	4 cut(s)	103, 445, 503, 611
Hpy188I	TCNGA	3 cut(s)	80, 397, 482
Hpy188III	TCNNGA	4 cut(s)	116, 428, 455, 764
Hpy8I	GTNNAC	4 cut(s)	103, 445, 503, 611
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	32, 62, 411, 589
HpyCH4V	TGCA	5 cut(s)	177, 275, 281, 436, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	2 cut(s)	396, 453
Hsp92II	CATG	5 cut(s)	305, 404, 442, 463, 670
Kzo9I	GATC	3 cut(s)	250, 424, 586
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	9 cut(s)	46, 130, 285, 318, 413, 440, 516, 630, 648
LweI	GCATC	2 cut(s)	319, 757
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	252, 426, 588
MboI	GATC	3 cut(s)	250, 424, 586
MboII	GAAGA	3 cut(s)	131, 308, 710
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	4 cut(s)	339, 431, 508, 653
MnlI	CCTC	9 cut(s)	125, 316, 377, 403, 497, 694, 696, 818, 822
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	2 cut(s)	156, 408
MslI	CAYNNNNRTG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	794
NdeII	GATC	3 cut(s)	250, 424, 586
NlaIII	CATG	5 cut(s)	305, 404, 442, 463, 670
NlaIV	GGNNCC	2 cut(s)	65, 386
NmeAIII	GCCGAG	1 cut(s)	848
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	2 cut(s)	305, 404
OliI	CACNNNNGTG	1 cut(s)	524
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	4 cut(s)	17, 242, 483, 828
PkrI	GCNGC	1 cut(s)	787
PsiI	TTATAA	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	65, 386
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	558, 729
RsaNI	GTAC	2 cut(s)	557, 728
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	156, 408
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	3 cut(s)	250, 424, 586
Sau96I	GGNCC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	2 cut(s)	319, 757
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	339, 431, 508, 653
SsiI	CCGC	1 cut(s)	785
StyI	CCWWGG	2 cut(s)	573, 590
TaqI	TCGA	1 cut(s)	740
TasI	AATT	4 cut(s)	339, 431, 508, 653
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	4 cut(s)	17, 242, 483, 828
Tru1I	TTAA	2 cut(s)	156, 408
Tru9I	TTAA	2 cut(s)	156, 408
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	22, 309, 476
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	2 cut(s)	305, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.