Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

16610100 .. 16624002

Gene Structure 13903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGAAGGCCAATGCCTTTAGAGTCCAATTTGATAGCAAGTAGAGAGTTGCAGAAGCCATCTCATCAGAATAATGAAGTTGCTGACCAGACCAGTCCCCCATTGGAGGAAGTCGACCTTGGTGAGAAGCAAAAGACCCAAGTCCCAAAGATCAACAACGTGTACACTCAAGACGTAGTGATGGTTAAATCAAAGAAAGTCCATCTTCAGTTGTTTGCTTTCACTCTTTTTCTTCTGTCCTGGCACCCCATCAAACGCGTCAGAGGCGAAGGAGTGGAAGTAATGGAGTATAATTATAGGGAAGGGAGCCCCAAGGGACCAGAGCACTGGGGAGAGCTCAACGAAGAAATGGAGAAATGCAAAGATGGAAAATTACAATCGCCAATAGATTTGTTCGATTCGAATGCTAGAAAAGCAATCTCAAGAGTAGATGATCTTAACATGAGCTATAACCCTTCAAAAGCAACTATGAAGCTTGAACACCATGCTATTTCGATTCAATGGGAGGGTGATGCTGGATCAATTCAAATAAATGGCACTGAATACTTGCTCAAAAGATGTCATTGGCACAGATCCTCTGAACATTTCATTAATGGCAGAAGGTTTCTCTTTCTCTTTGCTTCTCTGTTTGTAAAATCCAAAATACTTCATATATGTCTAAACAGAGTTTTTTTTATCAGTTATGATTTGGAATTGCACATGGTTCACCAAAGCCAGAACAACGATGTGGCTGTAGTCGCATTCCTATACCAAAGTGGCAATCCCGATCCTTTCCTGTCAAAGATAAGCAACGATGTATCCTCCCTAAGTGTTACAAAGGAGGCACGCTTGGGAGTGATTCATCCAAGTTTAATAAAATGGCCAAGCTCGCGATTTTATAGATATATAGGCTCACTCACGGCCCCTCCTTGCACTGAAGGAGTTATTTGGAGCGTAAGCGAAGAGGTACGTTCTGTTTCAAAAGAACAGCTGGGGCTAATTGAACAAGTCGATCGTGGGATGAATGCAAGACCATTACAGCCTCTCAACAATCGAGACATCACGCTCATTGGTCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

353

Amino Acids

40.28

Weight (kDa)

7.23

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	105 - 348	2.3e-28	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	258, 871
AciI	CCGC	1 cut(s)	1055
AclWI	GGATC	3 cut(s)	526, 567, 761
AcoI	YGGCCR	1 cut(s)	860
AcuI	CTGAAG	2 cut(s)	191, 936
AfaI	GTAC	2 cut(s)	164, 948
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	2 cut(s)	159, 256
AgsI	TTSAA	6 cut(s)	459, 479, 500, 527, 960, 983
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	5 cut(s)	337, 447, 475, 867, 970
AluI	AGCT	5 cut(s)	337, 447, 475, 867, 970
Alw21I	GWGCWC	2 cut(s)	327, 339
Alw26I	GTCTC	1 cut(s)	1029
AlwI	GGATC	3 cut(s)	526, 567, 761
AoxI	GGCC	3 cut(s)	8, 860, 900
AseI	ATTAAT	1 cut(s)	591
AspS9I	GGNCC	3 cut(s)	317, 901, 1052
AsuHPI	GGTGA	3 cut(s)	134, 521, 698
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	317, 1052
BalI	TGGCCA	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	2 cut(s)	311, 339
Bbv12I	GWGCWC	2 cut(s)	327, 339
BccI	CCATC	5 cut(s)	67, 175, 210, 257, 359
BceAI	ACGGC	1 cut(s)	915
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	1029
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	732
BfuI	GTATCC	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	317, 1052
BmgT120I	GGNCC	3 cut(s)	317, 901, 1052
BmiI	GGNNCC	4 cut(s)	245, 308, 318, 903
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	337
BoxI	GACNNNNGTC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	153, 406
BsaJI	CCNNGG	2 cut(s)	118, 312
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 889, 919
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	93, 332
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	118, 312
BseGI	GGATG	2 cut(s)	841, 1005
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseNI	ACTGG	2 cut(s)	93, 332
BseYI	CCCAGC	1 cut(s)	970
Bsh1236I	CGCG	2 cut(s)	258, 871
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	3 cut(s)	10, 862, 902
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	994
BsiHKAI	GWGCWC	2 cut(s)	327, 339
BslFI	GGGAC	3 cut(s)	81, 128, 330
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	1029
BsmFI	GGGAC	3 cut(s)	81, 128, 330
BsmI	GAATGC	3 cut(s)	409, 740, 1009
BsnI	GGCC	3 cut(s)	10, 862, 902
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	311, 327, 339
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
Bsp68I	TCGCGA	1 cut(s)	871
BspACI	CCGC	1 cut(s)	1055
BspANI	GGCC	3 cut(s)	10, 862, 902
BspFNI	CGCG	2 cut(s)	258, 871
BspLI	GGNNCC	4 cut(s)	245, 308, 318, 903
BspPI	GGATC	3 cut(s)	526, 567, 761
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	93, 332
BssECI	CCNNGG	2 cut(s)	118, 312
BssMI	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
BssT1I	CCWWGG	2 cut(s)	118, 312
Bst2UI	CCWGG	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	936
BstAUI	TGTACA	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	826, 869
BstDEI	CTNAG	1 cut(s)	806
BstF5I	GGATG	2 cut(s)	841, 1005
BstFNI	CGCG	2 cut(s)	258, 871
BstKTI	GATC	6 cut(s)	153, 436, 521, 575, 769, 994
BstMAI	GTCTC	1 cut(s)	1029
BstMBI	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 413, 737, 868
BstNI	CCWGG	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	2 cut(s)	258, 871
BstX2I	RGATCY	1 cut(s)	572
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	572
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	3 cut(s)	10, 862, 902
BtsCI	GGATG	2 cut(s)	841, 1005
BtsIMutI	CAGTG	3 cut(s)	325, 537, 912
BtuMI	TCGCGA	1 cut(s)	871
Cac8I	GCNNGC	2 cut(s)	826, 869
Cfr13I	GGNCC	3 cut(s)	317, 901, 1052
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	163, 947
CviAII	CATG	3 cut(s)	442, 485, 700
CviQI	GTAC	2 cut(s)	163, 947
DdeI	CTNAG	1 cut(s)	806
DpnI	GATC	6 cut(s)	152, 435, 520, 574, 768, 993
DpnII	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
EaeI	YGGCCR	1 cut(s)	860
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	118, 312
Eco24I	GRGCYC	2 cut(s)	311, 339
Eco47I	GGWCC	2 cut(s)	317, 1052
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	191, 936
EcoICRI	GAGCTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	118, 312
EcoT38I	GRGCYC	2 cut(s)	311, 339
ErhI	CCWWGG	2 cut(s)	118, 312
FaeI	CATG	3 cut(s)	445, 488, 703
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 189, 221
FaqI	GGGAC	3 cut(s)	81, 128, 330
FatI	CATG	3 cut(s)	441, 484, 699
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	2 cut(s)	828, 1012
FriOI	GRGCYC	2 cut(s)	311, 339
FspBI	CTAG	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	974
HaeIII	GGCC	3 cut(s)	10, 862, 902
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	445, 488, 703
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	23, 398, 496, 838
HphI	GGTGA	3 cut(s)	134, 521, 698
Hpy166II	GTNNAC	4 cut(s)	115, 163, 165, 706
Hpy188I	TCNGA	3 cut(s)	69, 263, 580
Hpy188III	TCNNGA	5 cut(s)	170, 423, 764, 870, 1034
Hpy8I	GTNNAC	4 cut(s)	115, 163, 165, 706
HpyAV	CCTTC	5 cut(s)	263, 296, 465, 594, 911
HpyCH4IV	ACGT	3 cut(s)	159, 174, 949
HpyCH4V	TGCA	5 cut(s)	52, 360, 697, 912, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 413, 737, 868
HpyF3I	CTNAG	1 cut(s)	806
HpySE526I	ACGT	3 cut(s)	159, 174, 949
Hsp92II	CATG	3 cut(s)	445, 488, 703
Kzo9I	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
LmnI	GCTCC	2 cut(s)	306, 930
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	3 cut(s)	159, 174, 949
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	6 cut(s)	152, 435, 520, 574, 768, 993
MboI	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
MboII	GAAGA	4 cut(s)	197, 224, 356, 953
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	3 cut(s)	311, 327, 339
MlsI	TGGCCA	1 cut(s)	862
MluCI	AATT	6 cut(s)	28, 292, 371, 522, 692, 978
MluI	ACGCGT	1 cut(s)	256
MluNI	TGGCCA	1 cut(s)	862
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	100, 257, 499, 586, 811, 814, 915, 937, 1032
Mox20I	TGGCCA	1 cut(s)	862
MscI	TGGCCA	1 cut(s)	862
MseI	TTAA	4 cut(s)	186, 438, 591, 851
Msp20I	TGGCCA	1 cut(s)	862
MspA1I	CMGCKG	1 cut(s)	970
MspR9I	CCNGG	1 cut(s)	241
Mva1269I	GAATGC	3 cut(s)	409, 740, 1009
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	2 cut(s)	258, 871
MwoI	GCNNNNNNNGC	4 cut(s)	264, 413, 737, 868
NdeII	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
NlaIII	CATG	3 cut(s)	445, 488, 703
NlaIV	GGNNCC	4 cut(s)	245, 308, 318, 903
NruI	TCGCGA	1 cut(s)	871
NspV	TTCGAA	1 cut(s)	401
PctI	GAATGC	3 cut(s)	409, 740, 1009
PfeI	GAWTC	3 cut(s)	398, 496, 838
Ple19I	CGATCG	1 cut(s)	994
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PshAI	GACNNNNGTC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	245, 308, 318, 903
PspPI	GGNCC	3 cut(s)	317, 901, 1052
PsuI	RGATCY	1 cut(s)	572
PvuI	CGATCG	1 cut(s)	994
PvuII	CAGCTG	1 cut(s)	970
RruI	TCGCGA	1 cut(s)	871
RsaI	GTAC	2 cut(s)	164, 948
RsaNI	GTAC	2 cut(s)	163, 947
SacI	GAGCTC	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	4 cut(s)	186, 438, 591, 851
Sau3AI	GATC	6 cut(s)	150, 433, 518, 572, 766, 991
Sau96I	GGNCC	3 cut(s)	317, 901, 1052
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	3 cut(s)	311, 327, 339
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	732
SfuI	TTCGAA	1 cut(s)	401
SinI	GGWCC	2 cut(s)	317, 1052
SmlI	CTYRAG	2 cut(s)	168, 421
SmoI	CTYRAG	2 cut(s)	168, 421
Sse9I	AATT	6 cut(s)	28, 292, 371, 522, 692, 978
SsiI	CCGC	1 cut(s)	1055
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	2 cut(s)	118, 312
TaiI	ACGT	3 cut(s)	162, 177, 952
TaqI	TCGA	6 cut(s)	114, 396, 401, 494, 990, 1033
TasI	AATT	6 cut(s)	28, 292, 371, 522, 692, 978
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	398, 496, 838
Tru1I	TTAA	4 cut(s)	186, 438, 591, 851
Tru9I	TTAA	4 cut(s)	186, 438, 591, 851
TscAI	CASTG	3 cut(s)	332, 544, 919
TspDTI	ATGAA	6 cut(s)	90, 485, 577, 638, 830, 1016
TspRI	CASTG	3 cut(s)	332, 544, 919
VpaK11BI	GGWCC	2 cut(s)	317, 1052
VspI	ATTAAT	1 cut(s)	591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.