Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

17028939 .. 17031224

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATGCTTCAATCAAAGCAAACCCATAATCAGTTCTTTGCTTTGACAATTTTTCTTTTGTATTGGAACCAAGTACCAGTTACAGCTAAACCACTCGACCAAGAAATAGCATTTGATTATAGGGAAGGGAGTGAGAAGGGCCCAGAACACTGGGGAGAGCTTAAACAAGAATGGGCGGCATGTAAAGATGGACGATCTCAATCACCAATAGGTTTAGACGAGAGTCGTGCCACCAAAGTGATCCAAAGTTCAAGGGATCTTACAGTGAGCTATAAGCCTTCCGATGCAACTCTCAAGAACGAAGGTCACTATATCGCGCTTGAATGGGAAGGCGATGCTGGATCTATCCAAATCGACGACTCAGATTACTTCCTCAAAAGATGTCATTGGCACACCCCATCTGAGCACACCGTTAATGGTGCAAGGTATGATTTGGAACTGCACATGGTGCATCAAAGTGCAGACCAGAACAATATAGCTGTAGTTGCATTTCTATACGAAGTCGGGCAGCCCAATGCTTTTTTATCAAAGAAAAAGTTGGGAGTGATTGATCCAAGGGAAATAAAATGGGACAGCTCAAGATTTTACAGATACATGGGATCACTCACAACTCCTCCCTGTACAGAAGGAGTTATTTGGACCGTAAACGAAAAGGTAGATATTGTTTCAAGAGAACAACTGGACTTACTTAAAGAAGCTGTTTATGATTATGCAGCGGCGAATGCAAGGCCATTGCAACGTGATGAAGGCCGAGATATTAAGCTCTATGGCCCGTCGTCATCGTTAAGTGACTTGAATGCAGAATTACCTCACAGGGGGAGACTTAATTCCGCAGCAATCCCTCGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

284

Amino Acids

32.2

Weight (kDa)

5.53

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	46 - 254	1.5e-33	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AciI	CCGC	3 cut(s)	176, 716, 831
AclWI	GGATC	5 cut(s)	235, 264, 349, 545, 607
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	2 cut(s)	75, 622
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgsI	TTSAA	5 cut(s)	11, 252, 323, 669, 796
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	7 cut(s)	86, 160, 270, 479, 576, 698, 763
AluI	AGCT	7 cut(s)	86, 160, 270, 479, 576, 698, 763
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	814
AlwI	GGATC	5 cut(s)	235, 264, 349, 545, 607
Ama87I	CYCGRG	1 cut(s)	843
AoxI	GGCC	4 cut(s)	139, 728, 748, 769
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	508, 713, 833
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	4 cut(s)	139, 140, 639, 770
AsuHPI	GGTGA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	843
AvaII	GGWCC	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	520, 725, 845
BccI	CCATC	2 cut(s)	182, 406
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcoDI	GTCTC	1 cut(s)	814
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	5 cut(s)	177, 509, 714, 717, 834
BlsI	GCNGC	5 cut(s)	178, 510, 715, 718, 835
Bme18I	GGWCC	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	843
BmgT120I	GGNCC	4 cut(s)	139, 140, 639, 770
BmiI	GGNNCC	2 cut(s)	68, 141
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	274, 325, 460
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	278, 562
BsaBI	GATNNNNATC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	554, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse1I	ACTGG	3 cut(s)	77, 155, 684
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	554, 842
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	375, 393
BseNI	ACTGG	3 cut(s)	77, 155, 684
BseRI	GAGGAG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	520, 725, 845
BsgI	GTGCAG	2 cut(s)	425, 480
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	141, 730, 750, 771
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	843
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmAI	GTCTC	1 cut(s)	814
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	2 cut(s)	727, 802
BsnI	GGCC	4 cut(s)	141, 730, 750, 771
BsoBI	CYCGRG	1 cut(s)	843
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	143, 408
Bsp1407I	TGTACA	1 cut(s)	620
Bsp143I	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
BspACI	CCGC	3 cut(s)	176, 716, 831
BspANI	GGCC	4 cut(s)	141, 730, 750, 771
BspCNI	CTCAG	2 cut(s)	374, 394
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	68, 141
BspPI	GGATC	5 cut(s)	235, 264, 349, 545, 607
BsrDI	GCAATG	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	77, 155, 684
BssECI	CCNNGG	2 cut(s)	554, 842
BssMI	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
BssT1I	CCWWGG	1 cut(s)	554
Bst4CI	ACNGT	3 cut(s)	265, 412, 643
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	620
BstDEI	CTNAG	2 cut(s)	361, 402
BstFNI	CGCG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	6 cut(s)	197, 243, 259, 344, 553, 602
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 485, 722
BstNSI	RCATGY	1 cut(s)	183
BstPAI	GACNNNNGTC	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	520, 725, 845
BstX2I	RGATCY	2 cut(s)	256, 341
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	2 cut(s)	256, 341
BsuRI	GGCC	4 cut(s)	141, 730, 750, 771
BtgZI	GCGATG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	148, 270
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	4 cut(s)	139, 140, 639, 770
Csp6I	GTAC	2 cut(s)	74, 621
CviAII	CATG	3 cut(s)	180, 445, 595
CviQI	GTAC	2 cut(s)	74, 621
DdeI	CTNAG	2 cut(s)	361, 402
DpnI	GATC	6 cut(s)	196, 242, 258, 343, 552, 601
DpnII	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
DraIII	CACNNNGTG	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	3 cut(s)	183, 448, 598
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	3 cut(s)	179, 444, 594
Fnu4HI	GCNGC	5 cut(s)	177, 509, 714, 717, 834
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	5 cut(s)	177, 509, 714, 717, 834
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	177, 509, 714, 717, 834
HaeIII	GGCC	4 cut(s)	141, 730, 750, 771
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	183, 448, 598
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	223, 359
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	3 cut(s)	283, 364, 403
Hpy188III	TCNNGA	4 cut(s)	295, 579, 669, 845
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	2 cut(s)	359, 778
HpyAV	CCTTC	7 cut(s)	119, 130, 288, 296, 323, 620, 740
HpyCH4III	ACNGT	3 cut(s)	265, 412, 643
HpyCH4IV	ACGT	1 cut(s)	739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 485, 722
HpyF3I	CTNAG	2 cut(s)	361, 402
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	3 cut(s)	183, 448, 598
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
LpnPI	CCDG	8 cut(s)	90, 136, 156, 324, 479, 631, 665, 799
Lsp1109I	GCAGC	3 cut(s)	520, 725, 845
LweI	GCATC	3 cut(s)	274, 325, 460
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	3 cut(s)	79, 305, 788
MalI	GATC	6 cut(s)	196, 242, 258, 343, 552, 601
MboI	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
MflI	RGATCY	2 cut(s)	256, 341
MhlI	GDGCHC	2 cut(s)	143, 408
MluCI	AATT	3 cut(s)	48, 803, 826
MlyI	GAGTC	2 cut(s)	232, 353
MnlI	CCTC	4 cut(s)	383, 624, 819, 852
MseI	TTAA	6 cut(s)	162, 414, 690, 759, 785, 825
MslI	CAYNNNNRTG	2 cut(s)	236, 456
MspA1I	CMGCKG	1 cut(s)	716
Mva1269I	GAATGC	2 cut(s)	727, 802
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	448, 485, 722
NdeII	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
NlaIII	CATG	3 cut(s)	183, 448, 598
NlaIV	GGNNCC	2 cut(s)	68, 141
NmeAIII	GCCGAG	1 cut(s)	776
NmuCI	GTSAC	2 cut(s)	305, 788
NspI	RCATGY	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	236
PctI	GAATGC	2 cut(s)	727, 802
PkrI	GCNGC	5 cut(s)	178, 510, 715, 718, 835
PleI	GAGTC	2 cut(s)	231, 353
PpsI	GAGTC	2 cut(s)	231, 353
PshAI	GACNNNNGTC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	68, 141
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	4 cut(s)	139, 140, 639, 770
PsuI	RGATCY	2 cut(s)	256, 341
RsaI	GTAC	2 cut(s)	75, 622
RsaNI	GTAC	2 cut(s)	74, 621
RseI	CAYNNNNRTG	2 cut(s)	236, 456
SaqAI	TTAA	6 cut(s)	162, 414, 690, 759, 785, 825
SatI	GCNGC	5 cut(s)	177, 509, 714, 717, 834
Sau3AI	GATC	6 cut(s)	194, 240, 256, 341, 550, 599
Sau96I	GGNCC	4 cut(s)	139, 140, 639, 770
SchI	GAGTC	2 cut(s)	232, 353
SduI	GDGCHC	2 cut(s)	143, 408
SfaNI	GCATC	3 cut(s)	274, 325, 460
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	2 cut(s)	236, 456
SmlI	CTYRAG	2 cut(s)	293, 577
SmoI	CTYRAG	2 cut(s)	293, 577
Sse9I	AATT	3 cut(s)	48, 803, 826
SsiI	CCGC	3 cut(s)	176, 716, 831
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	3 cut(s)	265, 412, 643
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	2 cut(s)	96, 354
TasI	AATT	3 cut(s)	48, 803, 826
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	2 cut(s)	179, 719
Tru1I	TTAA	6 cut(s)	162, 414, 690, 759, 785, 825
Tru9I	TTAA	6 cut(s)	162, 414, 690, 759, 785, 825
TscAI	CASTG	2 cut(s)	155, 270
TseFI	GTSAC	2 cut(s)	305, 788
TseI	GCWGC	3 cut(s)	508, 713, 833
Tsp45I	GTSAC	2 cut(s)	305, 788
TspDTI	ATGAA	1 cut(s)	759
TspRI	CASTG	2 cut(s)	155, 270
VpaK11BI	GGWCC	1 cut(s)	639
XceI	RCATGY	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.