Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

33569266 .. 33571043

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATTAGATCAATGAAAACTCCTCTTCAGTTCTTTGCTTTCACTCTTTTTCTTCTGTACTGGCAACCAATCAAACCCATCAGAGCTGGCCATGGTGTGGAAGAAATAGGGTATAATTATAGGAAAGGGAGCAAGAAGGGACCAGCGCACTGGGGAGACCTTAAGAAAGAATGGAAGGCATGCAAAGATGGAAAATTGCAATCGCCAATAGATTTGTCGGATAAGCACGCTAGAAAAGCAATCTCAAGGGTATATGATCTTAAAATGAGCTATAAGCCTTCAAATGCAACTATGAAGAATGAAGGTCATGCTATTGCGATTGAATGGGAGGGTGATGCGGGATCAATTCAGATCAATGGCACTGATTATTTCCTCAAACAATGCCATTGGCACAGATCCTCTGAACATTTCATTAATGGCAGAAGGTCTCTCTTTCTCTTATTTGCTTCTTTATTTGAAAAATCCAAAATGCTTCCTCCAATATGTCTAAACAGACTTCTCTTTATCAGTTATGATTTGGAATTGCACATGGTTCACCACAGCCGGAAGAACAACGTAGCTGTAGTCGCATTCCTCTACCAAATTGGTAGACGTAGTCCTTTTTTCTCAAAGATGAGCAATGACGTATCCTCTCTAACTGGTATAGAGAAGGAGATACACTTGGGAGTGATTGATCCAAGATTGATAAGATGGCCAAGCTCACAATTTTACAGATATATGGGCTCACTCACAACCCCTCCTTGCACAGGAGGAGTTATTTGGAGCGTAAACAAAAAGGTACTTTCTGTTACAAAAGAACAACTGAGGTTACTTGAACGAGTCGTCTATGGTCATGCAAAGATGAATGCTAGACCATTACAACGTCTTAATGGCCGGGATATCACTCTCTTTGGTGGTCCTCGGTGGGGATTGCGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

307

Amino Acids

35.27

Weight (kDa)

10.01

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	47 - 142	8.5e-12	Eukaryotic-type carbonic anhydrase
Carb_anhydrase	PF00194	170 - 295	6.8e-21	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	589
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	3 cut(s)	349, 390, 668
AcoI	YGGCCR	3 cut(s)	88, 692, 871
AcuI	CTGAAG	1 cut(s)	11
AfaI	GTAC	2 cut(s)	59, 780
AfiI	CCNNNNNNNGG	3 cut(s)	97, 746, 905
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	282, 323, 458, 815
AluBI	AGCT	4 cut(s)	86, 270, 560, 699
AluI	AGCT	4 cut(s)	86, 270, 560, 699
Alw26I	GTCTC	2 cut(s)	150, 432
AlwI	GGATC	3 cut(s)	349, 390, 668
AoxI	GGCC	3 cut(s)	88, 692, 871
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	140, 896
AsuC2I	CCSGG	1 cut(s)	875
AsuHPI	GGTGA	2 cut(s)	344, 527
AvaII	GGWCC	2 cut(s)	140, 896
BalI	TGGCCA	2 cut(s)	90, 694
BanII	GRGCYC	1 cut(s)	725
BccI	CCATC	3 cut(s)	86, 182, 684
BciVI	GTATCC	1 cut(s)	637
BcnI	CCSGG	1 cut(s)	875
BcoDI	GTCTC	2 cut(s)	150, 432
BfaI	CTAG	2 cut(s)	231, 849
BfmI	CTRYAG	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	875
Bme18I	GGWCC	2 cut(s)	140, 896
BmgT120I	GGNCC	2 cut(s)	140, 896
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	875
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	875
BsaI	GGTCTC	2 cut(s)	150, 432
BsaJI	CCNNGG	2 cut(s)	91, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 746, 905
Bse1I	ACTGG	3 cut(s)	65, 155, 643
Bse3DI	GCAATG	1 cut(s)	625
BseDI	CCNNGG	2 cut(s)	91, 899
BseLI	CCNNNNNNNGG	3 cut(s)	97, 746, 905
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	3 cut(s)	65, 155, 643
BseRI	GAGGAG	2 cut(s)	12, 765
BshFI	GGCC	3 cut(s)	90, 694, 873
BsiSI	CCGG	2 cut(s)	544, 874
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	97, 746, 905
BsmAI	GTCTC	2 cut(s)	150, 432
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	569, 850
BsnI	GGCC	3 cut(s)	90, 694, 873
Bso31I	GGTCTC	2 cut(s)	150, 432
Bsp1286I	GDGCHC	1 cut(s)	725
Bsp143I	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	3 cut(s)	90, 694, 873
BspCNI	CTCAG	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	349, 390, 668
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	2 cut(s)	150, 432
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	3 cut(s)	65, 155, 643
BssECI	CCNNGG	2 cut(s)	91, 899
BssMI	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
BssT1I	CCWWGG	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	161
BstC8I	GCNNGC	3 cut(s)	88, 181, 228
BstDEI	CTNAG	1 cut(s)	803
BstDSI	CCRYGG	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	6 cut(s)	11, 259, 344, 354, 398, 676
BstMAI	GTCTC	2 cut(s)	150, 432
BstMBI	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 566
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	873
BstSFI	CTRYAG	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	90, 694, 873
BtgI	CCRYGG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	148, 360
Cac8I	GCNNGC	3 cut(s)	88, 181, 228
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	140, 896
Csp6I	GTAC	2 cut(s)	58, 779
CviAII	CATG	5 cut(s)	92, 180, 308, 529, 833
CviQI	GTAC	2 cut(s)	58, 779
DdeI	CTNAG	1 cut(s)	803
DpnI	GATC	6 cut(s)	10, 258, 343, 353, 397, 675
DpnII	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
EaeI	YGGCCR	3 cut(s)	88, 692, 871
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	2 cut(s)	150, 432
Eco32I	GATATC	1 cut(s)	880
Eco47I	GGWCC	2 cut(s)	140, 896
Eco57I	CTGAAG	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoRV	GATATC	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	5 cut(s)	95, 183, 311, 532, 836
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	5 cut(s)	91, 179, 307, 528, 832
FauI	CCCGC	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	589
FriOI	GRGCYC	1 cut(s)	725
FspBI	CTAG	2 cut(s)	231, 849
GlaI	GCGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	90, 694, 873
HapII	CCGG	2 cut(s)	544, 874
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	5 cut(s)	95, 183, 311, 532, 836
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	819
HpaII	CCGG	2 cut(s)	544, 874
HphI	GGTGA	2 cut(s)	344, 527
Hpy166II	GTNNAC	3 cut(s)	535, 590, 769
Hpy188I	TCNGA	4 cut(s)	83, 220, 351, 403
Hpy8I	GTNNAC	3 cut(s)	535, 590, 769
HpyAV	CCTTC	6 cut(s)	130, 169, 288, 296, 417, 643
HpyCH4IV	ACGT	4 cut(s)	555, 592, 624, 862
HpyCH4V	TGCA	6 cut(s)	183, 199, 287, 526, 744, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 566
HpyF3I	CTNAG	1 cut(s)	803
HpySE526I	ACGT	4 cut(s)	555, 592, 624, 862
Hsp92II	CATG	5 cut(s)	95, 183, 311, 532, 836
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
LmnI	GCTCC	2 cut(s)	129, 762
LpnPI	CCDG	8 cut(s)	46, 72, 136, 156, 557, 624, 732, 887
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	231, 849
MaeII	ACGT	4 cut(s)	555, 592, 624, 862
MaeIII	GTNAC	3 cut(s)	787, 807, 914
MalI	GATC	6 cut(s)	10, 258, 343, 353, 397, 675
MboI	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
MboII	GAAGA	5 cut(s)	17, 44, 113, 307, 559
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	725
MlsI	TGGCCA	2 cut(s)	90, 694
MluCI	AATT	6 cut(s)	115, 194, 345, 521, 582, 704
MluNI	TGGCCA	2 cut(s)	90, 694
MlyI	GAGTC	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	2 cut(s)	90, 694
MscI	TGGCCA	2 cut(s)	90, 694
MseI	TTAA	4 cut(s)	162, 261, 414, 867
Msp20I	TGGCCA	2 cut(s)	90, 694
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	2 cut(s)	544, 874
MspR9I	CCNGG	1 cut(s)	875
Mva1269I	GAATGC	2 cut(s)	569, 850
MwoI	GCNNNNNNNGC	2 cut(s)	236, 566
NciI	CCSGG	1 cut(s)	875
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
NlaIII	CATG	5 cut(s)	95, 183, 311, 532, 836
NlaIV	GGNNCC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PctI	GAATGC	2 cut(s)	569, 850
PflFI	GACNNNGTC	1 cut(s)	594
PflMI	CCANNNNNTGG	1 cut(s)	97
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
PshBI	ATTAAT	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	140, 896
PsuI	RGATCY	1 cut(s)	395
PsyI	GACNNNGTC	1 cut(s)	594
RsaI	GTAC	2 cut(s)	59, 780
RsaNI	GTAC	2 cut(s)	58, 779
SaqAI	TTAA	4 cut(s)	162, 261, 414, 867
Sau3AI	GATC	6 cut(s)	8, 256, 341, 351, 395, 673
Sau96I	GGNCC	2 cut(s)	140, 896
SchI	GAGTC	1 cut(s)	828
ScrFI	CCNGG	1 cut(s)	875
SduI	GDGCHC	1 cut(s)	725
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	140, 896
SmlI	CTYRAG	2 cut(s)	161, 244
SmoI	CTYRAG	2 cut(s)	161, 244
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	6 cut(s)	115, 194, 345, 521, 582, 704
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	231, 849
StyD4I	CCNGG	1 cut(s)	873
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	4 cut(s)	558, 595, 627, 865
TasI	AATT	6 cut(s)	115, 194, 345, 521, 582, 704
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	4 cut(s)	162, 261, 414, 867
Tru9I	TTAA	4 cut(s)	162, 261, 414, 867
TscAI	CASTG	2 cut(s)	155, 367
TspDTI	ATGAA	5 cut(s)	29, 308, 315, 400, 857
TspRI	CASTG	2 cut(s)	155, 367
Tth111I	GACNNNGTC	1 cut(s)	594
Van91I	CCANNNNNTGG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	140, 896
VspI	ATTAAT	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	744
XceI	RCATGY	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	589
XspI	CTAG	2 cut(s)	231, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.