Rmu_co8349665.1_g000001

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8349665.1
OG0001343
Physical Location & Seq
Forward (+)
1 .. 946
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8349665.1_g000001.1.cds

Sequence Viewer

Length: 638 bp
acgtagtgatggttaaaacaaagaaagtccatcttcagttctttgctttcactctttttcttctgtcctggcaccccatcagacccgtcagtggccaaggagtgaaagaaatagggtatgattataggcaagggagccccaagggaccagagcactggggacagctcaaggaagaatggaaggaatgcaaagatggaaaattacaatcgccaatagatttgttggattcgaatgctcgaaaagaaatctcaagagtagatgatcttaacatgagctataagccttcaaatgcaaccatgaagcatgaaggttatgctatttcgattcaatgggagggtgatgctggttcaattcaaataaatggcactgattacttgctcaaaagatgtcattggcacagatcctctgaacatttcattaatggcagaaggtttctctttctctttgcttctctgtttgtaaaatcccaaatacttcatatatgtctaaacaaagttctctttatcagttatgatttggaattgcacatagttcaccaaagccagaacaacgatgtggctgtagtagcattcctataccaaagtggcaatcccgatcctttcctgtcaaaggtaaagttaaggctcaaaataccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase

Protein Analysis

211

Amino Acids

24.37

Weight (kDa)

9.17

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AclWI GGATC 2 cut(s) 395, 589
AcoI YGGCCR 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 91, 609
AgsI TTSAA 4 cut(s) 287, 328, 350, 355
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 165, 275
AluI AGCT 2 cut(s) 165, 275
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 2 cut(s) 395, 589
AoxI GGCC 1 cut(s) 93
AseI ATTAAT 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 349, 526
AsuII TTCGAA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 155
BccI CCATC 4 cut(s) 3, 38, 85, 187
BciT130I CCWGG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 3 cut(s) 73, 136, 146
BmrFI CCNGG 1 cut(s) 69
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 151, 234
BsaJI CCNNGG 2 cut(s) 96, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 609
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 96, 140
BseLI CCNNNNNNNGG 2 cut(s) 91, 609
BseNI ACTGG 1 cut(s) 160
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 155
BslFI GGGAC 2 cut(s) 158, 173
BslI CCNNNNNNNGG 2 cut(s) 91, 609
BsmFI GGGAC 2 cut(s) 158, 173
BsmI GAATGC 3 cut(s) 190, 237, 568
BsnI GGCC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 139, 155
Bsp143I GATC 3 cut(s) 261, 400, 594
BspANI GGCC 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 73, 136, 146
BspPI GGATC 2 cut(s) 395, 589
BspT104I TTCGAA 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 96, 140
BssMI GATC 3 cut(s) 261, 400, 594
BssT1I CCWWGG 2 cut(s) 96, 140
Bst2UI CCWGG 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 607
BstKTI GATC 3 cut(s) 264, 403, 597
BstMBI GATC 3 cut(s) 261, 400, 594
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 3 cut(s) 96, 153, 365
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 3 cut(s) 270, 297, 304
CviJI RGCY 8 cut(s) 95, 137, 165, 275, 282, 542, 559, 624
CviKI_1 RGCY 8 cut(s) 95, 137, 165, 275, 282, 542, 559, 624
DpnI GATC 3 cut(s) 263, 402, 596
DpnII GATC 3 cut(s) 261, 400, 594
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 96, 140
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 19
EcoNI CCTNNNNNAGG 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 96, 140
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 2 cut(s) 96, 140
FaeI CATG 3 cut(s) 273, 300, 307
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 2 cut(s) 158, 173
FatI CATG 3 cut(s) 269, 296, 303
FriOI GRGCYC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 3 cut(s) 273, 300, 307
HinfI GANTC 2 cut(s) 226, 324
HphI GGTGA 2 cut(s) 349, 526
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 2 cut(s) 82, 408
Hpy188III TCNNGA 2 cut(s) 251, 592
Hpy8I GTNNAC 1 cut(s) 534
HpyAV CCTTC 4 cut(s) 174, 293, 301, 422
HpyCH4IV ACGT 1 cut(s) 2
HpyCH4V TGCA 3 cut(s) 188, 292, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpySE526I ACGT 1 cut(s) 2
Hsp92II CATG 3 cut(s) 273, 300, 307
Kzo9I GATC 3 cut(s) 261, 400, 594
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 54, 81, 141, 161, 329, 556, 616
LweI GCATC 1 cut(s) 330
MaeII ACGT 1 cut(s) 2
MalI GATC 3 cut(s) 263, 402, 596
MboI GATC 3 cut(s) 261, 400, 594
MboII GAAGA 3 cut(s) 25, 52, 184
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 139, 155
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 3 cut(s) 199, 350, 520
MluNI TGGCCA 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 2 cut(s) 327, 414
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 4 cut(s) 14, 266, 419, 619
Msp20I TGGCCA 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 3 cut(s) 190, 237, 568
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 565
NdeII GATC 3 cut(s) 261, 400, 594
NlaIII CATG 3 cut(s) 273, 300, 307
NlaIV GGNNCC 3 cut(s) 73, 136, 146
NspV TTCGAA 1 cut(s) 229
PctI GAATGC 3 cut(s) 190, 237, 568
PfeI GAWTC 2 cut(s) 226, 324
PshBI ATTAAT 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 73, 136, 146
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 400
SaqAI TTAA 4 cut(s) 14, 266, 419, 619
Sau3AI GATC 3 cut(s) 261, 400, 594
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 139, 155
SetI ASST 5 cut(s) 167, 277, 312, 433, 614
SfaNI GCATC 1 cut(s) 330
SfcI CTRYAG 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 229
SinI GGWCC 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 166, 249
SmoI CTYRAG 2 cut(s) 166, 249
Sse9I AATT 3 cut(s) 199, 350, 520
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 96, 140
TaqI TCGA 3 cut(s) 229, 237, 322
TasI AATT 3 cut(s) 199, 350, 520
TfiI GAWTC 2 cut(s) 226, 324
Tru1I TTAA 4 cut(s) 14, 266, 419, 619
Tru9I TTAA 4 cut(s) 14, 266, 419, 619
TscAI CASTG 3 cut(s) 96, 160, 372
TspDTI ATGAA 4 cut(s) 313, 320, 405, 466
TspRI CASTG 3 cut(s) 96, 160, 372
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 419
XagI CCTNNNNNAGG 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.