Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001343

Physical Location & Seq

Genomic Coordinates Reverse (-)

33027600 .. 33029437

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTTGTATCAAAGGAATCCCTTCTTGGCTTCATTGTTTTTACCTTTTTCCTTCTTTGCTGGAACTCGACACCCATCAGAGCAAACGACGATGGGGAAGTAGACTTTGATTATCGGGAAGACCACCCGAGAGGACCACAACACTGGGGATACCTTAAGAAAGAATGGAGCTTATGCAAGGATGGAAAAAGGCAATCACCAATAGAGATATGGGAAAAGAATGCCACCAAAGACATCACAGATTCAAAGGATCTTATAGTGAGTTATAAGCCTGCAAATGCAACTATCAAAAATGAAGAACATGCTATATCGGTTTTATGGGAGGGTGATGCTGGCTCAATTGAAATCAATGGCACAATCTACTTCCTCAAACAATGCCATTGGCACCACCCCTCCGAGCATGTCGTTAATGGCAGAAGGTTTGATCTGGAATTGCACATGGTGACAGGACACATCACTTCTTTGATTGATGTACAAAAGGGGATACCCTTGGGAGTGCTTGATCCAAGGAGGGTGAAAAAGGGTCAACTCCATTACAAGATTGCGAAGCCAGAAAAGGCTGGCTCTAAATTTTACCGATACATGGGCTCTCTCACAACCCCTCCTTGTGTTGAAGAGGTACAAACTGCTTCGATAGAACAAGTGAAGCTACTTCAAGATGCAGTTTTTGATTTTGCGGCGAACAACGCAAGACCATTACAACCTCTTAACGGCCGAGAAATCAAGCTCTATGGGGACTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

248

Amino Acids

28.42

Weight (kDa)

6.6

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_anhydrase	PF00194	45 - 149	3.9e-15	Eukaryotic-type carbonic anhydrase
Carb_anhydrase	PF00194	185 - 242	3.1e-08	Eukaryotic-type carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001343)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16730 FvH4_6g16740 FvH4_6g16840 FvH4_6g16850
malus_domestica	MD04G1089400.v1.1 MD04G1089500.v1.1 MD12G1107800.v1.1 MD12G1108000.v1.1 MD12G1108100.v1.1
prunus_persica	Prupe.7G126200_v2.0.a1 Prupe.7G126300_v2.0.a1 Prupe.7G126400_v2.0.a1 Prupe.7G126500_v2.0.a1
pyrus_communis	pycom12g10780 pycom12g10800
rosa_chinensis	RchiOBHm_Chr3g0470661 RchiOBHm_Chr3g0470681 RchiOBHm_Chr3g0470851 RchiOBHm_Chr3g0470871
rosa_laevigata	RLG00000024238 RLG00000024240 RLG00000024248 RLG00000024249
rosa_multiflora	Rmu_co8349665.1_g000001 Rmu_sc0000867.1_g000003 Rmu_sc0002790.1_g000026
rosa_roxburghii	Rroxscaffold_6G00410460 Rroxscaffold_6G00410480 Rroxscaffold_6G00410610 Rroxscaffold_6G00410620
rosa_rugosa	Rorug03G0111500 Rorug03G0111600 Rorug03G0111600 Rorug03G0111700 Rorug03G0111900 Rorug03G0113200
rosa_samantha	Rh3AG161300 Rh3AG161600 Rh3BG185800 Rh3BG186100 Rh3BG188000 Rh3BG188200 Rh3CG176100 Rh3CG176500 Rh3CG178000 Rh3CG178200 Rh3DG187700 Rh3DG187800 Rh3DG189000 Rh3DG189100
rosa_wichuraiana	Rw0G004610 Rw3G015240 Rw3G015340 Rw3G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	2 cut(s)	258, 497
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	2 cut(s)	474, 621
AfiI	CCNNNNNNNGG	2 cut(s)	583, 710
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	246, 344, 614, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	171, 649, 727
AluI	AGCT	3 cut(s)	171, 649, 727
AlwI	GGATC	2 cut(s)	258, 497
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	712
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	189, 338, 454, 526
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	3 cut(s)	83, 86, 176
BceAI	ACGGC	1 cut(s)	727
BciVI	GTATCC	2 cut(s)	143, 477
BfrI	CTTAAG	1 cut(s)	155
BfuI	GTATCC	2 cut(s)	143, 477
BisI	GCNGC	1 cut(s)	678
BlsI	GCNGC	1 cut(s)	679
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	319, 649
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	489, 506
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 586, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 710
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	489, 506
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	583, 710
BseNI	ACTGG	1 cut(s)	149
BseX3I	CGGCCG	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	715
BshFI	GGCC	1 cut(s)	714
BshNI	GGYRCC	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	715
BsiHKCI	CYCGRG	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	583, 710
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	714
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	250, 424, 502
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	258, 497
BspT107I	GGYRCC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	489, 506
BssMI	GATC	3 cut(s)	250, 424, 502
BssT1I	CCWWGG	2 cut(s)	489, 506
Bst6I	CTCTTC	1 cut(s)	609
BstAFI	CTTAAG	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	273, 334, 562
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	253, 427, 505
BstMBI	GATC	3 cut(s)	250, 424, 502
BstMCI	CGRYCG	1 cut(s)	715
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNSI	RCATGY	2 cut(s)	305, 404
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	712
BsuI	GTATCC	2 cut(s)	143, 477
BsuRI	GGCC	1 cut(s)	714
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	273, 334, 562
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	473, 620
CviAII	CATG	4 cut(s)	302, 401, 439, 583
CviQI	GTAC	2 cut(s)	473, 620
DpnI	GATC	3 cut(s)	252, 426, 504
DpnII	GATC	3 cut(s)	250, 424, 502
DraIII	CACNNNGTG	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	712
EagI	CGGCCG	1 cut(s)	712
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EclXI	CGGCCG	1 cut(s)	712
Eco130I	CCWWGG	2 cut(s)	489, 506
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	489, 506
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	2 cut(s)	489, 506
FaeI	CATG	4 cut(s)	305, 404, 442, 586
FatI	CATG	4 cut(s)	301, 400, 438, 582
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	678
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	1 cut(s)	678
GluI	GCNGC	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	305, 404, 442, 586
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	2 cut(s)	17, 242
HphI	GGTGA	4 cut(s)	189, 338, 454, 526
Hpy166II	GTNNAC	2 cut(s)	103, 527
Hpy188I	TCNGA	2 cut(s)	80, 397
Hpy188III	TCNNGA	3 cut(s)	116, 428, 656
Hpy8I	GTNNAC	2 cut(s)	103, 527
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	32, 62, 411
HpyCH4V	TGCA	5 cut(s)	177, 275, 281, 436, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
Hsp92II	CATG	4 cut(s)	305, 404, 442, 586
Kzo9I	GATC	3 cut(s)	250, 424, 502
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	8 cut(s)	46, 130, 285, 318, 413, 432, 546, 564
LweI	GCATC	2 cut(s)	319, 649
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	252, 426, 504
MboI	GATC	3 cut(s)	250, 424, 502
MboII	GAAGA	3 cut(s)	131, 308, 626
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	3 cut(s)	339, 431, 569
MnlI	CCTC	8 cut(s)	125, 316, 377, 403, 504, 610, 612, 714
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	3 cut(s)	156, 408, 708
MspCI	CTTAAG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	686
NdeII	GATC	3 cut(s)	250, 424, 502
NlaIII	CATG	4 cut(s)	305, 404, 442, 586
NlaIV	GGNNCC	1 cut(s)	386
NmeAIII	GCCGAG	1 cut(s)	740
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	2 cut(s)	305, 404
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	17, 242
PkrI	GCNGC	1 cut(s)	679
PsiI	TTATAA	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	474, 621
RsaNI	GTAC	2 cut(s)	473, 620
SaqAI	TTAA	3 cut(s)	156, 408, 708
SatI	GCNGC	1 cut(s)	678
Sau3AI	GATC	3 cut(s)	250, 424, 502
Sau96I	GGNCC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	8 cut(s)	47, 156, 173, 422, 621, 651, 706, 729
SfaNI	GCATC	2 cut(s)	319, 649
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	339, 431, 569
SsiI	CCGC	1 cut(s)	677
StyI	CCWWGG	2 cut(s)	489, 506
TaqI	TCGA	2 cut(s)	68, 632
TasI	AATT	3 cut(s)	339, 431, 569
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	17, 242
Tru1I	TTAA	3 cut(s)	156, 408, 708
Tru9I	TTAA	3 cut(s)	156, 408, 708
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	22, 309
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	2 cut(s)	305, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.